View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9363_low_35 (Length: 250)
Name: NF9363_low_35
Description: NF9363
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9363_low_35 |
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Alignment Details
Target: chr1 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 48108262 - 48108503
Alignment:
| Q |
1 |
taagaaataaagaatgagagattttgnnnnnnncttccttataatctattatagaatttaaatattttgttttgttatttaaaaagtgcaatcatatcgt |
100 |
Q |
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| T |
48108262 |
taagaaataaagaatgagagattttgtttttttcttccttataatctattatagaatttaaatattttgttttgttatttaaaaagtgcaatcatatcct |
48108361 |
T |
|
| Q |
101 |
aaaatctaactcaaccgactatactaatattgttagaatgaatattttttgtagcgtcacacattatccaaaagttttaacttttgtggtgtttatcatt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48108362 |
aaaatctaactcaaccgactatactaatattgttagaatgaatattatttgtagcgtcacacattatccaaaagttttaacttttgtggtgtttatcatt |
48108461 |
T |
|
| Q |
201 |
ttgtttacaacaagnnnnnnnttctaaatcttacgaacacca |
242 |
Q |
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|| ||||||||||| ||||||||||||||||||||| |
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| T |
48108462 |
ttatttacaacaagaaaaaaattctaaatcttacgaacacca |
48108503 |
T |
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