View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9363_low_38 (Length: 247)
Name: NF9363_low_38
Description: NF9363
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9363_low_38 |
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Alignment Details
Target: chr4 (Bit Score: 226; Significance: 1e-125; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 56168747 - 56168518
Alignment:
| Q |
1 |
catcagtgtcctgaagagtcaggaatgttgtagccacacctgtctttcctgcacgaccagtacgcccaatacgatgggtgtacatttcaatattcccagg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56168747 |
catcagtgtcctgaagagtcaggaatgttgtagccacacctgtctttcctgcacgaccagtacgcccaatacgatgggtgtacatttcaatattcccagg |
56168648 |
T |
|
| Q |
101 |
catatcatagttgataacatgagccacatcaggaatgtcaataccacgtccagcaacatcggttgcaacaagcacattatatctcttggtcctaaatcct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56168647 |
catatcatagttgataacatgagccacatcaggaatgtcaataccacgtccagcaacatcggttgcaacaagcacattatatctcttggtcctaaatcct |
56168548 |
T |
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| Q |
201 |
tcaagactaatctccctctgatcctgtgat |
230 |
Q |
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||||||||||||||||||||||| |||||| |
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| T |
56168547 |
tcaagactaatctccctctgatcttgtgat |
56168518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 706963 - 707192
Alignment:
| Q |
1 |
catcagtgtcctgaagagtcaggaatgttgtagccacacctgtctttcctgcacgaccagtacgcccaatacgatgggtgtacatttcaatattcccagg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| |
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| T |
706963 |
catcagtgtcctgaagagtcaggaatgttgtagccacacccgtctttcctgcacggccggtacgcccaatacgatgggtgtacatttcaatattcccagg |
707062 |
T |
|
| Q |
101 |
catatcatagttgataacatgagccacatcaggaatgtcaataccacgtccagcaacatcggttgcaacaagcacattatatctcttggtcctaaatcct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
707063 |
catatcatagttgataacatgagccacatcaggaatgtcaataccacgtccagcaacatcggttgcaacaagcacattatatctcttggtcctaaatcct |
707162 |
T |
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| Q |
201 |
tcaagactaatctccctctgatcctgtgat |
230 |
Q |
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||||||||||| |||||||||||||||||| |
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| T |
707163 |
tcaagactaatttccctctgatcctgtgat |
707192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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