View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9363_low_40 (Length: 243)
Name: NF9363_low_40
Description: NF9363
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9363_low_40 |
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Alignment Details
Target: chr2 (Bit Score: 148; Significance: 3e-78; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 1 - 196
Target Start/End: Original strand, 31720947 - 31721142
Alignment:
| Q |
1 |
accggacatgtcagacagagacacgatagtgacactgctatggacactcataatcatttgagaaaattaaagtaattgaatgtaattgtcacatgtgtca |
100 |
Q |
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| T |
31720947 |
accggacatgtcagacagagacacaatactgacactgctatggacactcataatcatgtgagaaaattaaagtgataaagtgtaattatcacatgtgtca |
31721046 |
T |
|
| Q |
101 |
gtgtcgtattgttgtcggacattagacatgccttcaattaggagtgttggtgctgcatagatcatgaaaaataattttgattttccattaattgta |
196 |
Q |
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| T |
31721047 |
gtgtcgtattgttgtcagacattagacatgccttcaattaggagtgttggtgctggatagatcatgaaaaatgattttgactttccattaattgta |
31721142 |
T |
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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 108
Target Start/End: Complemental strand, 38957389 - 38957340
Alignment:
| Q |
56 |
atttgagaaaattaaagtaattgaatgtaattgtcacatgtgtcagtgtcgta |
108 |
Q |
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| T |
38957389 |
atttgagaaaaataaattaattgaatgtaa---tcacatgtgtcagtgtcgta |
38957340 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 51 - 87
Target Start/End: Original strand, 3846266 - 3846302
Alignment:
| Q |
51 |
taatcatttgagaaaattaaagtaattgaatgtaatt |
87 |
Q |
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|||| ||||||||||||| |||||||||||||||||| |
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| T |
3846266 |
taataatttgagaaaatttaagtaattgaatgtaatt |
3846302 |
T |
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