View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9363_low_42 (Length: 240)
Name: NF9363_low_42
Description: NF9363
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9363_low_42 |
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Alignment Details
Target: chr8 (Bit Score: 170; Significance: 2e-91; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 51 - 224
Target Start/End: Complemental strand, 43143467 - 43143294
Alignment:
| Q |
51 |
ctatctcaaactcatatgttgctacagagattggtgaataaaaagaaagaggtagatgtgtaccatatgatattcatagatgcagtaactccataaactt |
150 |
Q |
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| T |
43143467 |
ctatctcaaactcatatgttgctacagagattggagaataaaaagaaagaggtagatgtgtaccatatgatattcatagatgcagtaactccataaactt |
43143368 |
T |
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| Q |
151 |
ctagatggtaaatcaagagggtatccagtttgaataaatatctgtgaagcaccaaaacagttaaaaacataatt |
224 |
Q |
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| T |
43143367 |
ctagatggtaaatcaagagggtatccagtttgaataaatatctgtgaagcaccaaaacagttaaaaacataatt |
43143294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 98 - 216
Target Start/End: Complemental strand, 43155379 - 43155261
Alignment:
| Q |
98 |
agaggtagatgtgtaccatatgatattcatagatgcagtaactccataaacttctagatggtaaatcaagagggtatccagtttgaataaatatctgtga |
197 |
Q |
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| T |
43155379 |
agaggtagatgtgtaccatatgatattcatagatgcagtaactccctaaactgccagatggcaaatcaagagggtatccagtttgaataaatatctgtga |
43155280 |
T |
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| Q |
198 |
agcaccaaaacagttaaaa |
216 |
Q |
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| T |
43155279 |
aacatcaaaacagttaaaa |
43155261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 74; Significance: 4e-34; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 98 - 195
Target Start/End: Original strand, 33834209 - 33834306
Alignment:
| Q |
98 |
agaggtagatgtgtaccatatgatattcatagatgcagtaactccataaacttctagatggtaaatcaagagggtatccagtttgaataaatatctgt |
195 |
Q |
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| T |
33834209 |
agaggtaggtgtgtaccatatggtattcatagatgcagtaactccctaaacttccagatggtaaatcaagaggatatccagtttgtataaatatctgt |
33834306 |
T |
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