View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9363_low_5 (Length: 475)

Name: NF9363_low_5
Description: NF9363
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9363_low_5
NF9363_low_5
[»] chr4 (8 HSPs)
chr4 (1-458)||(43440532-43441009)
chr4 (78-403)||(43434742-43435067)
chr4 (91-403)||(43426250-43426562)
chr4 (7-71)||(43426145-43426209)
chr4 (418-460)||(43426597-43426639)
chr4 (13-71)||(43434665-43434723)
chr4 (282-394)||(43421863-43421975)
chr4 (417-451)||(43435101-43435135)
[»] chr3 (1 HSPs)
chr3 (191-393)||(41930402-41930612)
[»] scaffold0252 (2 HSPs)
scaffold0252 (89-405)||(20251-20553)
scaffold0252 (405-451)||(20572-20618)
[»] chr5 (1 HSPs)
chr5 (285-382)||(40186762-40186860)


Alignment Details
Target: chr4 (Bit Score: 377; Significance: 0; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 1 - 458
Target Start/End: Original strand, 43440532 - 43441009
Alignment:
Q  1 aatccctccaagctttaacgatgaatcgcgtgaaagcaataactacttccctcagattcctcaaatcatcaaaatcactcgctactccgaaccaggttac 100  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||    
T  43440532 aatccctccaagcttttacgatgaatcgcgtgaaagcaataactacttccctcagattcctcaaatcatcaaaatcactctctactccgaatcaggttac 43440631  T
Q  101 tcacttctcttctttcacattttcaatccctcttttgaatcattcacacgatctattccgttttcacaacaatcatcaaaaacactgtttttcttcaaaa 200  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43440632 tcacttctcttctttcactttttcaatccctcttttgaatcattcacacgatctattccgttttcacaacaatcatcaaaaacactgtttttcttcaaaa 43440731  T
Q  201 cccaacatgattttagagcgtgtttacaccaacgattgttctgaagagttagagaaagagttggaagcatgtcgtgaatcattgacccatgaaactgttg 300  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43440732 cccaacatgattttagagcgtgtttacaccaacgattggtctgaagagttagagaaagagttggaagcatgtcgtgaatcattgacccatgaaactgttg 43440831  T
Q  301 tttatgttttaaagcgattggataaaaacccaattaaagtttttacctttttcaattgggttagtgagaaagattggtttatgttaagttcttcggttta 400  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  43440832 tttatgttttaaatcgattggataaaaacccaattaaagtttttacctttttcaattgggttagtgagaaagattggtttatgtaaagttcttcggttta 43440931  T
Q  401 --------------------tagttagtaacaagacgatgaaagagttttggattgttcttaaggctatgatggataa 458  Q
                        ||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  43440932 tagcttagttcttacggttttagctagtaacaagaagatgaaagagttttggattgttcttaaggctatgatggataa 43441009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 78 - 403
Target Start/End: Original strand, 43434742 - 43435067
Alignment:
Q  78 ctcgctactccgaaccaggttactcacttctcttctttcacattttcaatccctcttttgaatcattcacacgatctattccgttttcacaacaatcatc 177  Q
    ||||| |||| |||||||||| ||||||| ||||||| | | |||||| ||||||||||||| |  ||  | ||| | ||  ||||||||||||||||||    
T  43434742 ctcgcaactcggaaccaggtttctcacttttcttcttcctctttttcactccctcttttgaaccgatccaaagatttgttatgttttcacaacaatcatc 43434841  T
Q  178 aaaaacactgtttttcttcaaaacccaacatgattttagagcgtgtttacaccaacgattgttctgaagagttagagaaagagttggaagcatgtcgtga 277  Q
    ||||||||| ||||||||||||||||||||||||||| ||||||||||  ||||| ||||| ||||||||||||||||||||||||||||||||||||||    
T  43434842 aaaaacactatttttcttcaaaacccaacatgattttggagcgtgtttttaccaatgattggtctgaagagttagagaaagagttggaagcatgtcgtga 43434941  T
Q  278 atcattgacccatgaaactgttgtttatgttttaaagcgattggataaaaacccaattaaagtttttacctttttcaattgggttagtgagaaagattgg 377  Q
    ||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||    
T  43434942 atcattgactcatgaaactgttgtttatgttttgaagcgattggataaaaacccaattaaagtttttacctttttcaattgggtcagtgagaaagagtgg 43435041  T
Q  378 tttatgttaagttcttcggtttatag 403  Q
    ||||||  ||||||||||||||||||    
T  43435042 tttatggcaagttcttcggtttatag 43435067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 165; E-Value: 5e-88
Query Start/End: Original strand, 91 - 403
Target Start/End: Original strand, 43426250 - 43426562
Alignment:
Q  91 accaggttactcacttctcttctttcacattttcaatccctcttttgaatcattcacacgatctattccgttttcacaacaatcatcaaaaacactgttt 190  Q
    |||||||| |||| || ||||||| | | |||||| | ||| | ||||||| ||||||| || |||| | ||||||||||| |||| ||||||||| |||    
T  43426250 accaggtttctcatttttcttcttcctccttttcacttcctatgttgaatcgttcacacaatttattaccttttcacaacagtcataaaaaacactattt 43426349  T
Q  191 ttcttcaaaacccaacatgattttagagcgtgtttacaccaacgattgttctgaagagttagagaaagagttggaagcatgtcgtgaatcattgacccat 290  Q
    ||||||||||||||||   ||||||||||||||||||||||| ||||| |||||||||||||||||||| || |||| ||||||||||||||||||||||    
T  43426350 ttcttcaaaacccaactcaattttagagcgtgtttacaccaatgattggtctgaagagttagagaaagaatttgaagaatgtcgtgaatcattgacccat 43426449  T
Q  291 gaaactgttgtttatgttttaaagcgattggataaaaacccaattaaagtttttacctttttcaattgggttagtgagaaagattggtttatgttaagtt 390  Q
    |||||||||||||||||||| |||||||||||||| |||||  |||||||||| ||||||||||||||||| ||||||||||| |||||||||   ||||    
T  43426450 gaaactgttgtttatgttttgaagcgattggataataaccctcttaaagttttcacctttttcaattgggtcagtgagaaagagtggtttatggctagtt 43426549  T
Q  391 cttcggtttatag 403  Q
    |||||| ||||||    
T  43426550 cttcggcttatag 43426562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 7 - 71
Target Start/End: Original strand, 43426145 - 43426209
Alignment:
Q  7 tccaagctttaacgatgaatcgcgtgaaagcaataactacttccctcagattcctcaaatcatca 71  Q
    ||||| |||| |||||||||||| ||||||||||||| |||||||||| ||||||||||||||||    
T  43426145 tccaaacttttacgatgaatcgcatgaaagcaataaccacttccctcaaattcctcaaatcatca 43426209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 418 - 460
Target Start/End: Original strand, 43426597 - 43426639
Alignment:
Q  418 atgaaagagttttggattgttcttaaggctatgatggataatg 460  Q
    |||||||||||||||||||||||||||||||||| ||| ||||    
T  43426597 atgaaagagttttggattgttcttaaggctatgaaggaaaatg 43426639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 13 - 71
Target Start/End: Original strand, 43434665 - 43434723
Alignment:
Q  13 ctttaacgatgaatcgcgtgaaagcaataactacttccctcagattcctcaaatcatca 71  Q
    |||| |||||||||||| |||||||||||||  | |||||||||| |||||||||||||    
T  43434665 cttttacgatgaatcgcatgaaagcaataacctcgtccctcagatacctcaaatcatca 43434723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 282 - 394
Target Start/End: Original strand, 43421863 - 43421975
Alignment:
Q  282 ttgacccatgaaactgttgtttatgttttaaagcgattggataaaaacccaattaaagtttttacctttttcaattgggttagtgagaaagattggttta 381  Q
    |||||||||||||| ||||||||  |||| || | |||||||||  ||||| | |||| || |  ||||||||||||||| ||| ||||| ||||||||     
T  43421863 ttgacccatgaaaccgttgtttacattttgaaacaattggataatgacccattaaaagcttcttgctttttcaattgggtcagtaagaaaaattggtttt 43421962  T
Q  382 tgttaagttcttc 394  Q
    ||  |||||||||    
T  43421963 tgccaagttcttc 43421975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 417 - 451
Target Start/End: Original strand, 43435101 - 43435135
Alignment:
Q  417 gatgaaagagttttggattgttcttaaggctatga 451  Q
    |||||||||||||||||||||||||| ||||||||    
T  43435101 gatgaaagagttttggattgttcttagggctatga 43435135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 162; Significance: 3e-86; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 191 - 393
Target Start/End: Original strand, 41930402 - 41930612
Alignment:
Q  191 ttcttcaaaacccaacatgattttagagcgtgtttacaccaacgattgttctgaagagttagagaaagagttggaagcatgtcgtgaatcattgacccat 290  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41930402 ttcttcaaaacccaacatgattttagagcgtgtttacaccaacgattggtctgaagagttagagaaagagttggaagcatgtcgtgaatcattgacccat 41930501  T
Q  291 g--------aaactgttgtttatgttttaaagcgattggataaaaacccaattaaagtttttacctttttcaattgggttagtgagaaagattggtttat 382  Q
    |        ||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| |||||||||||||||| ||||||||||||||    
T  41930502 gaaactggcaaactgttgtttatgttttaaagtgattggataaaaacctaattaaagtttttacctttatcaattgggttagtgataaagattggtttat 41930601  T
Q  383 gttaagttctt 393  Q
    |||||||||||    
T  41930602 gttaagttctt 41930612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0252 (Bit Score: 146; Significance: 1e-76; HSPs: 2)
Name: scaffold0252
Description:

Target: scaffold0252; HSP #1
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 89 - 405
Target Start/End: Original strand, 20251 - 20553
Alignment:
Q  89 gaaccaggttactcacttctcttctttcacattttcaatccctcttttgaatcattcacacgatctattccgttttcacaacaatcatcaaaaacactgt 188  Q
    |||||||||| ||||||| ||||||| | | |||||| ||||||||| |||||  ||  | ||| | ||  ||||||||||||||||||||||||||| |    
T  20251 gaaccaggtttctcacttttcttcttcctctttttcactccctctttggaatcgatccaaagatttgttatgttttcacaacaatcatcaaaaacactat 20350  T
Q  189 ttttcttcaaaacccaacatgattttagagcgtgtttacaccaacgattgttctgaagagttagagaaagagttggaagcatgtcgtgaatcattgaccc 288  Q
    |||||||||||||||||||||||||||||||||||||  ||||| ||||| ||| |||              ||||||||||||||||||||||||||||    
T  20351 ttttcttcaaaacccaacatgattttagagcgtgtttttaccaatgattggtctcaag--------------ttggaagcatgtcgtgaatcattgaccc 20436  T
Q  289 atgaaactgttgtttatgttttaaagcgattggataaaaacccaattaaagtttttacctttttcaattgggttagtgagaaagattggtttatgttaag 388  Q
    |||||||| ||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||| ||||| ||||||||||| |||||||||   ||    
T  20437 atgaaactcttgtttatgttttgaagcgattggataaaaacccacttaaagtttttacctttttcaactgggtcagtgagaaagagtggtttatggctag 20536  T
Q  389 ttcttcggtttatagtt 405  Q
    |||||||||||||||||    
T  20537 ttcttcggtttatagtt 20553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0252; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 405 - 451
Target Start/End: Original strand, 20572 - 20618
Alignment:
Q  405 tagtaacaagacgatgaaagagttttggattgttcttaaggctatga 451  Q
    |||||| ||||  ||||||||||||||||||||||||| ||||||||    
T  20572 tagtaataagagtatgaaagagttttggattgttcttagggctatga 20618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 285 - 382
Target Start/End: Complemental strand, 40186860 - 40186762
Alignment:
Q  285 acccatgaaactgttgtttatg-ttttaaagcgattggataaaaacccaattaaagtttttacctttttcaattgggttagtgagaaagattggtttat 382  Q
    |||||||||||||||||||| | |||| |||||||||||| | || |||  |||||||||| | |||||||| ||||| | | ||||| | ||||||||    
T  40186860 acccatgaaactgttgtttacgtttttgaagcgattggatcataaaccacataaagttttttcttttttcaactgggtcactcagaaacaatggtttat 40186762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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