View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9363_low_51 (Length: 229)
Name: NF9363_low_51
Description: NF9363
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9363_low_51 |
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| [»] chr4 (1 HSPs) |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 56169281 - 56169053
Alignment:
| Q |
1 |
tcagcaaatttacataaaataggttagcacagcctagagaaagtgataaacaaaatcataaaagacaaacactaaagttaaatgataaaaagcattatat |
100 |
Q |
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| T |
56169281 |
tcagcaaatttacataaaataggttagcacagcctagagaaagtgataaacaaaatcataaaagacaaacactaaagtgaaatgataaaaagcattatat |
56169182 |
T |
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| Q |
101 |
cataataggcataagacaaacgttaatgccaaataacaagaccaatcaaaagattgtcatctaaaattatcaattcttgttagaaatataataaacaggt |
200 |
Q |
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| T |
56169181 |
cataataggcataagacaaacgttaatgccaaataacaagaccaatcaaaagattgtcatctaaaattatcaattcttgttagaaatataataaacaggt |
56169082 |
T |
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| Q |
201 |
agcaactctagtcaggcataacaatagca |
229 |
Q |
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| T |
56169081 |
agcaactctagtcagccataacaatagca |
56169053 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 112; Significance: 9e-57; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 90 - 229
Target Start/End: Original strand, 706522 - 706661
Alignment:
| Q |
90 |
aagcattatatcataataggcataagacaaacgttaatgccaaataacaagaccaatcaaaagattgtcatctaaaattatcaattcttgttagaaatat |
189 |
Q |
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|||||||||||||||||| |||||| ||||| |||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
706522 |
aagcattatatcataataagcataaaacaaagattaacaccaaataacaagaccaatcaaaagattgtcatctaaaactatcaattcttgttagaaatat |
706621 |
T |
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| Q |
190 |
aataaacaggtagcaactctagtcaggcataacaatagca |
229 |
Q |
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| T |
706622 |
aataaacaggtagcaactctagtcaggcataacaatagca |
706661 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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