View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9363_low_59 (Length: 216)
Name: NF9363_low_59
Description: NF9363
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9363_low_59 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 31720722 - 31720937
Alignment:
| Q |
1 |
accatgtaaagcttgttactgggacaatgcttgccggtactatcatcttttttatgtataataattatagttgtagcaacaattttgaactatgacagtt |
100 |
Q |
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| T |
31720722 |
accatgtaaggcttgttactgggacaatgcttgcaggtactatcatcttttttatgtataataattatagttgtagcgacaattttgaactatgacagtt |
31720821 |
T |
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| Q |
101 |
agacacgaatctgacactgatacatcgatactgatgatgattttgagtaaatgccgtggtgtcgtatcggtgtcagatattgggcatgtcttaaatttga |
200 |
Q |
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| T |
31720822 |
agacacgaatctgacactgatacatcgacactgatgatgattttgagtaaatgccgtggtgtcgtatcggtgtcagatactgggcatgtcttaaatttga |
31720921 |
T |
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| Q |
201 |
agtgtcggtgctatat |
216 |
Q |
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| T |
31720922 |
agtgtcggtgctatat |
31720937 |
T |
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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 212
Target Start/End: Complemental strand, 32916311 - 32916263
Alignment:
| Q |
164 |
gtatcggtgtcagatattgggcatgtcttaaatttgaagtgtcggtgct |
212 |
Q |
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| T |
32916311 |
gtatcggtgtcagttagcggacatgtcttaaatttgaagtgtcgatgct |
32916263 |
T |
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