View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9363_low_6 (Length: 464)

Name: NF9363_low_6
Description: NF9363
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9363_low_6
NF9363_low_6
[»] chr1 (3 HSPs)
chr1 (241-445)||(20500778-20500982)
chr1 (1-152)||(20501052-20501203)
chr1 (288-329)||(18750191-18750232)
[»] chr7 (11 HSPs)
chr7 (233-445)||(16544084-16544305)
chr7 (1-152)||(16544381-16544532)
chr7 (1-152)||(16621130-16621281)
chr7 (233-445)||(16621357-16621578)
chr7 (288-410)||(16911210-16911332)
chr7 (288-329)||(559900-559941)
chr7 (288-329)||(569809-569850)
chr7 (288-329)||(17515807-17515848)
chr7 (288-329)||(17537366-17537407)
chr7 (288-321)||(38411779-38411812)
chr7 (291-331)||(16474437-16474477)
[»] chr2 (4 HSPs)
chr2 (1-137)||(31356005-31356141)
chr2 (288-326)||(17686395-17686433)
chr2 (288-329)||(21851555-21851596)
chr2 (288-329)||(21859990-21860031)
[»] chr3 (3 HSPs)
chr3 (1-80)||(18040180-18040259)
chr3 (288-410)||(4504947-4505070)
chr3 (288-325)||(2216578-2216615)
[»] chr5 (2 HSPs)
chr5 (233-325)||(29185221-29185320)
chr5 (288-329)||(31549550-31549591)
[»] chr6 (2 HSPs)
chr6 (288-329)||(27048692-27048733)
chr6 (288-329)||(27058936-27058977)
[»] scaffold1120 (1 HSPs)
scaffold1120 (288-326)||(384-422)
[»] chr8 (1 HSPs)
chr8 (288-325)||(23091551-23091588)


Alignment Details
Target: chr1 (Bit Score: 148; Significance: 6e-78; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 241 - 445
Target Start/End: Complemental strand, 20500982 - 20500778
Alignment:
Q  241 atgaagaacaatcttcatcttctccgacgggattgtatctttcggcgcggtggtggcaccaccgcgccggaatttcaaactcctcttttctnnnnnnnct 340  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| |||||||||||||||||||        |    
T  20500982 atgaagaacaatcttcatcttctccgacgggattgtatcttccggcgcggtggtggcaccaccacgccggagtttcaaactcctcttttctaaaaacttt 20500883  T
Q  341 taacaatttcgaaattcctttttcgttctaaactcaaatctggattcataatttcagaaacagttcacaaacactctagatctaagattaaacacggcac 440  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||| ||||||| |||||||||||||||||| ||||| ||||||||||||||||||    
T  20500882 taacaatttcgaaattcctttttcgttctaaactcaaatccggattcacaatttcaaaaacagttcacaaacactgtagatttaagattaaacacggcac 20500783  T
Q  441 aaaga 445  Q
    |||||    
T  20500782 aaaga 20500778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 1 - 152
Target Start/End: Complemental strand, 20501203 - 20501052
Alignment:
Q  1 gattaaaagacagtttcaacaacagccatcagatcgtggaactatccagatctggtggcacaaaaacatgagggagcatgagataaccgtggatgcacgc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  20501203 gattaaaagacagtttcaacaacagccatcagatcgtggaactatcaagatctggtggcacaaaaacatgagggagcatgagataacggtggatgcacgc 20501104  T
Q  101 gcgtgggatcgagagtgagtataaaatgaatattctgttttaagatttcatt 152  Q
    |||||||||||||||||||||||||| |||||||||| || |||||||||||    
T  20501103 gcgtgggatcgagagtgagtataaaaggaatattctgattaaagatttcatt 20501052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 288 - 329
Target Start/End: Complemental strand, 18750232 - 18750191
Alignment:
Q  288 cggtggtggcaccaccgcgccggaatttcaaactcctctttt 329  Q
    |||||||||||||||||||||||| |||||||||||| ||||    
T  18750232 cggtggtggcaccaccgcgccggagtttcaaactcctttttt 18750191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 128; Significance: 5e-66; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 233 - 445
Target Start/End: Complemental strand, 16544305 - 16544084
Alignment:
Q  233 tgaagaacatgaagaacaatcttcatcttctccgacgggattgtatctttcggcgcggtgg-------tggcaccaccgcgccggaatttcaaactcctc 325  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||       |||||||||||| |||||||||||||||||||    
T  16544305 tgaagaacatgaagaacaatcttcatcttctccgacgggattgtatcttccagcgcggtggccggtggtggcaccaccgcaccggaatttcaaactcctc 16544206  T
Q  326 ttttctnnnnnnnctt--aacaatttcgaaattcctttttcgttctaaactcaaatctggattcataatttcagaaacagttcacaaacactctagatct 423  Q
    ||||||       |||  |||| |||||||||||| ||||||||||||| |||||||  |||||||||||||| ||||||||||||||||||||||||||    
T  16544205 ttttctaaaaaaacttttaacagtttcgaaattccattttcgttctaaattcaaatccagattcataatttcaaaaacagttcacaaacactctagatct 16544106  T
Q  424 aagattaaacacggcacaaaga 445  Q
    ||||||||||||||||||||||    
T  16544105 aagattaaacacggcacaaaga 16544084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 1 - 152
Target Start/End: Complemental strand, 16544532 - 16544381
Alignment:
Q  1 gattaaaagacagtttcaacaacagccatcagatcgtggaactatccagatctggtggcacaaaaacatgagggagcatgagataaccgtggatgcacgc 100  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | |||||||| |    
T  16544532 gattaaaagacagtttcaacaacagccatcagatcgtggaattatccagatctggtggcacaaaaacatgagggagcatgagataacggaggatgcacac 16544433  T
Q  101 gcgtgggatcgagagtgagtataaaatgaatattctgttttaagatttcatt 152  Q
    |||||||||||||||||||||||||| |||||||||| ||||||||||||||    
T  16544432 gcgtgggatcgagagtgagtataaaaggaatattctgatttaagatttcatt 16544381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 1 - 152
Target Start/End: Original strand, 16621130 - 16621281
Alignment:
Q  1 gattaaaagacagtttcaacaacagccatcagatcgtggaactatccagatctggtggcacaaaaacatgagggagcatgagataaccgtggatgcacgc 100  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | |||||||| |    
T  16621130 gattaaaagacagtttcaacaacagccatcagatcgtggaattatccagatctggtggcacaaaaacatgagggagcatgagataacggaggatgcacac 16621229  T
Q  101 gcgtgggatcgagagtgagtataaaatgaatattctgttttaagatttcatt 152  Q
    |||||||||||||||||||||||||| |||||||||| ||||||||||||||    
T  16621230 gcgtgggatcgagagtgagtataaaaggaatattctgatttaagatttcatt 16621281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 233 - 445
Target Start/End: Original strand, 16621357 - 16621578
Alignment:
Q  233 tgaagaacatgaagaacaatcttcatcttctccgacgggattgtatctttcggcgcggtgg-------tggcaccaccgcgccggaatttcaaactcctc 325  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||       |||||||||||| |||||||||||||||||||    
T  16621357 tgaagaacatgaagaacaatcttcatcttctccgacgggattgtatcttccagcgcggtggccggtggtggcaccaccgcaccggaatttcaaactcctc 16621456  T
Q  326 ttttctnnnnnnnctt--aacaatttcgaaattcctttttcgttctaaactcaaatctggattcataatttcagaaacagttcacaaacactctagatct 423  Q
    ||||||       |||  |||| |||||||||||| ||||||||||||| |||||||  |||||||||||||| ||||||||||||||||||||||||||    
T  16621457 ttttctaaaaaaacttttaacagtttcgaaattccattttcgttctaaattcaaatccagattcataatttcaaaaacagttcacaaacactctagatct 16621556  T
Q  424 aagattaaacacggcacaaaga 445  Q
    ||||||||||||||||||||||    
T  16621557 aagattaaacacggcacaaaga 16621578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 288 - 410
Target Start/End: Original strand, 16911210 - 16911332
Alignment:
Q  288 cggtggtggcaccaccgcgccggaatttcaaactcctcttttctnnnnnnncttaacaatttcgaaattcctttttcgttctaaactcaaatctggattc 387  Q
    |||||||||||||||| ||| |||||||||||||||||||||||        |||||| ||| |||||||||||||||||||| ||||||||| ||||||    
T  16911210 cggtggtggcaccaccacgctggaatttcaaactcctcttttctaaaaacttttaacagttttgaaattcctttttcgttctagactcaaatccggattc 16911309  T
Q  388 ataatttcagaaacagttcacaa 410  Q
    | ||||||| |||||||||||||    
T  16911310 acaatttcaaaaacagttcacaa 16911332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 288 - 329
Target Start/End: Original strand, 559900 - 559941
Alignment:
Q  288 cggtggtggcaccaccgcgccggaatttcaaactcctctttt 329  Q
    |||||||||||||||||||||||| |||||||||||||||||    
T  559900 cggtggtggcaccaccgcgccggagtttcaaactcctctttt 559941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 288 - 329
Target Start/End: Original strand, 569809 - 569850
Alignment:
Q  288 cggtggtggcaccaccgcgccggaatttcaaactcctctttt 329  Q
    |||||||||||||||||||||||| |||||||||||||||||    
T  569809 cggtggtggcaccaccgcgccggagtttcaaactcctctttt 569850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 288 - 329
Target Start/End: Original strand, 17515807 - 17515848
Alignment:
Q  288 cggtggtggcaccaccgcgccggaatttcaaactcctctttt 329  Q
    |||||||||||||||||||||||| |||||||||||||||||    
T  17515807 cggtggtggcaccaccgcgccggagtttcaaactcctctttt 17515848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 288 - 329
Target Start/End: Complemental strand, 17537407 - 17537366
Alignment:
Q  288 cggtggtggcaccaccgcgccggaatttcaaactcctctttt 329  Q
    |||||||||||||||||||||||| |||||||||||||||||    
T  17537407 cggtggtggcaccaccgcgccggagtttcaaactcctctttt 17537366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 288 - 321
Target Start/End: Complemental strand, 38411812 - 38411779
Alignment:
Q  288 cggtggtggcaccaccgcgccggaatttcaaact 321  Q
    |||||||||||||||||||||||| |||||||||    
T  38411812 cggtggtggcaccaccgcgccggagtttcaaact 38411779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 291 - 331
Target Start/End: Original strand, 16474437 - 16474477
Alignment:
Q  291 tggtggcaccaccgcgccggaatttcaaactcctcttttct 331  Q
    ||||||||||||||||||||| ||| ||||||||| |||||    
T  16474437 tggtggcaccaccgcgccggagttttaaactcctcctttct 16474477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 109; Significance: 1e-54; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 1 - 137
Target Start/End: Original strand, 31356005 - 31356141
Alignment:
Q  1 gattaaaagacagtttcaacaacagccatcagatcgtggaactatccagatctggtggcacaaaaacatgagggagcatgagataaccgtggatgcacgc 100  Q
    |||||||||| |||||||||||  ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| ||||||||||||    
T  31356005 gattaaaagatagtttcaacaatggccatcagatcgtggaactatccagatctggtggcgcaaaaacatgaaggagcatgagataacggtggatgcacgc 31356104  T
Q  101 gcgtgggatcgagagtgagtataaaatgaatattctg 137  Q
    |||||||||||||||||||||||||| ||||||||||    
T  31356105 gcgtgggatcgagagtgagtataaaaggaatattctg 31356141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 288 - 326
Target Start/End: Original strand, 17686395 - 17686433
Alignment:
Q  288 cggtggtggcaccaccgcgccggaatttcaaactcctct 326  Q
    |||||||||||||||||||||||| ||||||||||||||    
T  17686395 cggtggtggcaccaccgcgccggagtttcaaactcctct 17686433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 288 - 329
Target Start/End: Original strand, 21851555 - 21851596
Alignment:
Q  288 cggtggtggcaccaccgcgccggaatttcaaactcctctttt 329  Q
    |||||||||||||||||||||||| ||| |||||||| ||||    
T  21851555 cggtggtggcaccaccgcgccggagttttaaactcctttttt 21851596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 288 - 329
Target Start/End: Original strand, 21859990 - 21860031
Alignment:
Q  288 cggtggtggcaccaccgcgccggaatttcaaactcctctttt 329  Q
    |||||||||||||||||||||||| ||| |||||||| ||||    
T  21859990 cggtggtggcaccaccgcgccggagttttaaactcctttttt 21860031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 72; Significance: 1e-32; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 18040259 - 18040180
Alignment:
Q  1 gattaaaagacagtttcaacaacagccatcagatcgtggaactatccagatctggtggcacaaaaacatgagggagcatg 80  Q
    |||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18040259 gattaaaagacaatttcaacaatagccatcagatcgtggaactatccagatctggtggcacaaaaacatgagggagcatg 18040180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 288 - 410
Target Start/End: Original strand, 4504947 - 4505070
Alignment:
Q  288 cggtggtggcaccaccgcgccggaatttcaaactcctcttttctnnnnnnnctt-aacaatttcgaaattcctttttcgttctaaactcaaatctggatt 386  Q
    |||||||||||||||| |||||||||||||||||||||||||||        || |||| ||| |||||||||||||||||||| ||||||||| |||||    
T  4504947 cggtggtggcaccaccacgccggaatttcaaactcctcttttctaaaaaacttttaacagttttgaaattcctttttcgttctagactcaaatccggatt 4505046  T
Q  387 cataatttcagaaacagttcacaa 410  Q
    || ||||||| |||||||||||||    
T  4505047 cacaatttcaaaaacagttcacaa 4505070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 288 - 325
Target Start/End: Original strand, 2216578 - 2216615
Alignment:
Q  288 cggtggtggcaccaccgcgccggaatttcaaactcctc 325  Q
    |||||||||| ||||||||||||| |||||||||||||    
T  2216578 cggtggtggcgccaccgcgccggagtttcaaactcctc 2216615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 58; Significance: 3e-24; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 233 - 325
Target Start/End: Original strand, 29185221 - 29185320
Alignment:
Q  233 tgaagaacatgaagaacaatcttcatcttctccgacgggattgtatctttcggcg-------cggtggtggcaccaccgcgccggaatttcaaactcctc 325  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||| |||||       ||||||||||||||||| |||||| |||||||||||||    
T  29185221 tgaagaacatgaagaacaatcttcatcttctccgacgggattgtgtcttccggcgcggtggccggtggtggcaccaccgtgccggagtttcaaactcctc 29185320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 288 - 329
Target Start/End: Original strand, 31549550 - 31549591
Alignment:
Q  288 cggtggtggcaccaccgcgccggaatttcaaactcctctttt 329  Q
    |||||||||||||||||||||||| ||| |||||||| ||||    
T  31549550 cggtggtggcaccaccgcgccggagttttaaactcctttttt 31549591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 288 - 329
Target Start/End: Original strand, 27048692 - 27048733
Alignment:
Q  288 cggtggtggcaccaccgcgccggaatttcaaactcctctttt 329  Q
    |||||||||||||||||||||||| |||||||||||||||||    
T  27048692 cggtggtggcaccaccgcgccggagtttcaaactcctctttt 27048733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 288 - 329
Target Start/End: Original strand, 27058936 - 27058977
Alignment:
Q  288 cggtggtggcaccaccgcgccggaatttcaaactcctctttt 329  Q
    |||||||||||||||||||||||| |||||||||||||||||    
T  27058936 cggtggtggcaccaccgcgccggagtttcaaactcctctttt 27058977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1120 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold1120
Description:

Target: scaffold1120; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 288 - 326
Target Start/End: Complemental strand, 422 - 384
Alignment:
Q  288 cggtggtggcaccaccgcgccggaatttcaaactcctct 326  Q
    |||||||||||||||||||||||| ||||||||||||||    
T  422 cggtggtggcaccaccgcgccggagtttcaaactcctct 384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 288 - 325
Target Start/End: Complemental strand, 23091588 - 23091551
Alignment:
Q  288 cggtggtggcaccaccgcgccggaatttcaaactcctc 325  Q
    |||||||||||||||||||||||| ||| |||||||||    
T  23091588 cggtggtggcaccaccgcgccggagttttaaactcctc 23091551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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