View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9363_low_61 (Length: 210)
Name: NF9363_low_61
Description: NF9363
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9363_low_61 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 174; Significance: 8e-94; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 174; E-Value: 8e-94
Query Start/End: Original strand, 1 - 186
Target Start/End: Complemental strand, 42393444 - 42393259
Alignment:
| Q |
1 |
aaggggcggacgcatgtaggaatatgcagtttccaaattacactccaattgcgttgaatgaattcatgagcaggttcaacaattagcaattagcttcata |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||| |
|
|
| T |
42393444 |
aaggggcggacgcatgtaggaatatgcagtttccaaattacactccaattgcgttgaatgaattcacgagcaggttcaacaattagcaattagcctcata |
42393345 |
T |
|
| Q |
101 |
cgtaagctgtatgaagacttgacagaaaattttccatcacttgacacattccagatacgacagtccatgatatctctgctaaaaag |
186 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42393344 |
cgtaagctgtatgaagacttgacagaatattttccatcacttgacacattccagatacgacagtccatgatatctctgctaaaaag |
42393259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University