View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9363_low_7 (Length: 463)

Name: NF9363_low_7
Description: NF9363
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9363_low_7
NF9363_low_7
[»] chr3 (14 HSPs)
chr3 (192-449)||(2495602-2495862)
chr3 (303-449)||(2446957-2447103)
chr3 (225-449)||(2634063-2634286)
chr3 (312-449)||(2504120-2504256)
chr3 (219-445)||(675086-675312)
chr3 (349-445)||(749682-749780)
chr3 (18-102)||(1429639-1429723)
chr3 (18-77)||(2495440-2495499)
chr3 (49-127)||(2485154-2485233)
chr3 (292-403)||(7331897-7332007)
chr3 (23-77)||(7332225-7332279)
chr3 (93-137)||(675355-675401)
chr3 (93-137)||(749954-750000)
chr3 (219-288)||(2485317-2485386)
[»] scaffold0019 (2 HSPs)
scaffold0019 (219-449)||(2297-2526)
scaffold0019 (23-127)||(2107-2213)


Alignment Details
Target: chr3 (Bit Score: 138; Significance: 6e-72; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 192 - 449
Target Start/End: Original strand, 2495602 - 2495862
Alignment:
Q  192 ctgctaagatatttggtcatcatgtttttgtgcaaatgatattattgaattctttcacgcacgcgatagtatacaattccatagcattggtgaaatggtc 291  Q
    |||||||||||| ||||||||   || |||||||||||||||||||||||||||  | ||| || | |||  ||||||||||||||||||||||||   |    
T  2495602 ctgctaagatatatggtcatctcattgttgtgcaaatgatattattgaattcttaaatgcatgcaacagtgcacaattccatagcattggtgaaatttcc 2495701  T
Q  292 tgaatattattgatttagtgtctgagattgtaacaaagttcatttccatatgcgcgt--ttgccttataatgtctcgatatttttactttagttgcacct 389  Q
    ||||||| |||||| ||||||||||||||||||  ||||||||||||||||| | ||  ||||||||||||||||| ||||||||| |||| ||||||||    
T  2495702 tgaatatgattgatatagtgtctgagattgtaaggaagttcatttccatatgtgtgtgtttgccttataatgtctcaatatttttattttaattgcacct 2495801  T
Q  390 gaagcctcaaaatagacttataacatcatagttgaaatgcctc-ttttcaggttggttgtg 449  Q
    ||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||    
T  2495802 gaagcctcaaaatagacttataacatcatagttgaaatgtctctttttcaggttggttgtg 2495862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 131; E-Value: 9e-68
Query Start/End: Original strand, 303 - 449
Target Start/End: Original strand, 2446957 - 2447103
Alignment:
Q  303 gatttagtgtctgagattgtaacaaagttcatttccatatgcgcgtttgccttataatgtctcgatatttttactttagttgcacctgaagcctcaaaat 402  Q
    |||| |||||||||||||||||||||||||||||||||||||  ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  2446957 gattgagtgtctgagattgtaacaaagttcatttccatatgcatgtttgccttataatgtcacgatatttttactttagttgcacctgaagcctcaaaat 2447056  T
Q  403 agacttataacatcatagttgaaatgcctcttttcaggttggttgtg 449  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  2447057 agacttataacatcatagttgaaatgcctcttttcaggttggttgtg 2447103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 225 - 449
Target Start/End: Original strand, 2634063 - 2634286
Alignment:
Q  225 aaatgatattattgaattctttcacgcacgcgatag--tatacaattccatagcattggtgaaatggtctgaatattattgatttagtgtctgagattgt 322  Q
    ||||||||||||||||||||| || |||||  | |   | |||||||| ||| |||||||||||||  |||||||| |||||| || | |||||||||||    
T  2634063 aaatgatattattgaattcttacatgcacgtcacacattgtacaattc-ataacattggtgaaatgacctgaatataattgatataatttctgagattgt 2634161  T
Q  323 aacaaagttcatttccatatgcgcgtttgccttataatgtctcgatatttttactttagttgcacctgaagcctcaaaatagacttataacatcatagtt 422  Q
    |   ||||||||||||||||| |   ||||||||||||||||| ||||||| | |||  |||||||| ||||||||||||||||||||||||||||||||    
T  2634162 attgaagttcatttccatatgtg---ttgccttataatgtctcaatattttaatttttattgcacctcaagcctcaaaatagacttataacatcatagtt 2634258  T
Q  423 gaaatgcctc-ttttcaggttggttgtg 449  Q
     ||||| ||| |||||||| ||||||||    
T  2634259 caaatgtctctttttcaggctggttgtg 2634286  T

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Target: chr3; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 312 - 449
Target Start/End: Original strand, 2504120 - 2504256
Alignment:
Q  312 tctgagattgtaacaaagttcatttccatatgcgcgtttgccttataatgtctcgatatttttactttagttgcacctgaagcctcaaaatagac-ttat 410  Q
    |||||||||||| | |||||| |||| ||||| | ||| ||||||||||||||| ||||||| | ||||| ||||||| ||||||||||||| || ||||    
T  2504120 tctgagattgtagcgaagttcctttcaatatgtgtgtt-gccttataatgtctcaatattttaattttaggtgcaccttaagcctcaaaatacactttat 2504218  T
Q  411 aacatcatagttgaaatgcctcttttcaggttggttgtg 449  Q
    |||||  ||||||||||| ||| ||||||||||| ||||    
T  2504219 aacatattagttgaaatgtctc-tttcaggttggctgtg 2504256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 219 - 445
Target Start/End: Complemental strand, 675312 - 675086
Alignment:
Q  219 ttgtgcaaatgatattattgaattctttcacgcacgcgatag--tatacaattccatagcattggtgaaatggtctgaatattattgatttagtgtctga 316  Q
    ||||| ||||||||||||||||||||| ||| ||||  | |   | |||||||| ||| |||||||||||||   || |||| |||||| ||||| ||||    
T  675312 ttgtgaaaatgatattattgaattcttacacacacgtaacacattgtacaattc-ataacattggtgaaatgacgtggatatgattgatatagtgcctga 675214  T
Q  317 gattgtaacaaagttcatttccatatgcgcgtttgccttataatgtctcgatatttttactttagt-tgcacctgaagcctcaaaatagacttataacat 415  Q
    |||||||   || ||  |||||| ||| |   |||||||||| |||||| ||||||| | ||| || ||||||| |||| |||||||||||||||||| |    
T  675213 gattgtagtgaattttgtttccacatgtg---ttgccttatattgtctcaatattttaatttttgtgtgcacctcaagcttcaaaatagacttataactt 675117  T
Q  416 catagttgaaatgcctc-ttttcaggttggt 445  Q
    | ||||||||||| ||| |||||||||||||    
T  675116 cgtagttgaaatgtctctttttcaggttggt 675086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 349 - 445
Target Start/End: Complemental strand, 749780 - 749682
Alignment:
Q  349 ttgccttataatgtctcgatatttttactttagt-tgcacctgaagcctcaaaatagacttataacatcatagttgaaatgcctc-ttttcaggttggt 445  Q
    |||||||||| |||||| ||||||| | ||| || ||||||| |||| |||||||||||||||||| || ||||||||||| ||| |||||||||||||    
T  749780 ttgccttatattgtctcaatattttaatttttgtgtgcacctcaagcttcaaaatagacttataacttcgtagttgaaatgtctctttttcaggttggt 749682  T

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Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 18 - 102
Target Start/End: Complemental strand, 1429723 - 1429639
Alignment:
Q  18 acaagttcaaattgacaataaccatcttatggtttttatgttttatctcttgctttttgactttgtctaattgattacaagataa 102  Q
    |||| |||||||||||||| |  || ||||||||||||||||||||||||||||||||||   ||| |||| |||||||| ||||    
T  1429723 acaaattcaaattgacaatgagaatgttatggtttttatgttttatctcttgctttttgatagtgtttaatggattacaaaataa 1429639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 18 - 77
Target Start/End: Original strand, 2495440 - 2495499
Alignment:
Q  18 acaagttcaaattgacaataaccatcttatggtttttatgttttatctcttgctttttga 77  Q
    |||| |||||||||||||| | | ||||||||||||||||||||||||||| ||||||||    
T  2495440 acaaattcaaattgacaatgagcctcttatggtttttatgttttatctcttactttttga 2495499  T

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Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 49 - 127
Target Start/End: Original strand, 2485154 - 2485233
Alignment:
Q  49 gtttttatgttttatctcttgctttttgactttgtctaattgattacaagataa-tgattattcttgttgaatgattaat 127  Q
    |||||| ||||||||||||| | ||||||   ||| |||| ||||||||||||| ||||||||||||||||||| |||||    
T  2485154 gtttttttgttttatctctttccttttgatagtgtttaatggattacaagataactgattattcttgttgaatgtttaat 2485233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 292 - 403
Target Start/End: Complemental strand, 7332007 - 7331897
Alignment:
Q  292 tgaatattattgatttagtgtctgagattgtaacaaagttcatttccatatgcgcgtttgccttataatgtctcgatatttttactttagttgcacctga 391  Q
    ||||||| |||||| |||||||||||||||||   |||||| |||||||||| | | ||| ||||| ||||||| ||||| | | |||| |||||||| |    
T  7332007 tgaatatgattgatatagtgtctgagattgtagtgaagttcctttccatatgtgtg-ttgtcttatgatgtctcaatattataattttaattgcacctta 7331909  T
Q  392 agcctcaaaata 403  Q
    |||||| |||||    
T  7331908 agcctcgaaata 7331897  T

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Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 23 - 77
Target Start/End: Complemental strand, 7332279 - 7332225
Alignment:
Q  23 ttcaaattgacaataaccatcttatggtttttatgttttatctcttgctttttga 77  Q
    |||||||||||||  | |||| |||||||||||||||||| ||||||||||||||    
T  7332279 ttcaaattgacaaggagcatcatatggtttttatgttttagctcttgctttttga 7332225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 93 - 137
Target Start/End: Complemental strand, 675401 - 675355
Alignment:
Q  93 tacaagataa-tgattattcttgttgaatgattaat-tgaaaatgaa 137  Q
    |||||||||| ||||||||||||||||||||||||| ||||||||||    
T  675401 tacaagataactgattattcttgttgaatgattaatgtgaaaatgaa 675355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 93 - 137
Target Start/End: Complemental strand, 750000 - 749954
Alignment:
Q  93 tacaagataa-tgattattcttgttgaatgattaat-tgaaaatgaa 137  Q
    |||||||||| ||||||||||||||||||||||||| ||||||||||    
T  750000 tacaagataactgattattcttgttgaatgattaatgtgaaaatgaa 749954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 219 - 288
Target Start/End: Original strand, 2485317 - 2485386
Alignment:
Q  219 ttgtgcaaatgatattattgaattctttcacgcacgcgatagtatacaattccatagcattggtgaaatg 288  Q
    ||||| ||||||||||||||||||| |  |||||| |   ||| ||||||||||||||| ||||||||||    
T  2485317 ttgtgtaaatgatattattgaattcctagacgcacacatcagtgtacaattccatagcaatggtgaaatg 2485386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 69; Significance: 9e-31; HSPs: 2)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 219 - 449
Target Start/End: Original strand, 2297 - 2526
Alignment:
Q  219 ttgtgcaaatgatattattgaattctttcacgcacgcgata--gtatacaattccatagcattggtgaaatggtctgaatattattgatttagtgtctga 316  Q
    ||||| ||||||||||||||||||||| ||| || || | |  || |||||||| ||| ||||||| |||||  |||||||| ||||||||| ||||| |    
T  2297 ttgtgtaaatgatattattgaattcttacacacatgcaacacagtgtacaattc-ataacattggtaaaatgacctgaatataattgatttattgtctta 2395  T
Q  317 gattgtaacaaagttcatttccatatgcgcgtttgccttataatgtctcgatatttttactttagttgcacctgaagcctcaaaatagacttataacatc 416  Q
    |||| ||   ||||||||||||||||  |   |||||||| |||||||| ||||||| |  ||  |||||||| || |||||||||||||||||||| ||    
T  2396 gattatagtgaagttcatttccatatatg---ttgccttacaatgtctcaatattttaatatttattgcacctcaatcctcaaaatagacttataacgtc 2492  T
Q  417 atagttgaaatgcctc-ttttcaggttggttgtg 449  Q
    |||||||||||| ||| |||||||||||||||||    
T  2493 atagttgaaatgtctctttttcaggttggttgtg 2526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 23 - 127
Target Start/End: Original strand, 2107 - 2213
Alignment:
Q  23 ttcaaattgacaataaccatcttatggtttt-tatgttttatctcttgctttttgactttgtctaattgattacaagataa-tgattattcttgttgaat 120  Q
    ||||| || ||||| | |||||||||||||| ||||||||| ||||||||| ||||   ||| |||| ||||||||||||| ||||||||||||||||||    
T  2107 ttcaagttaacaatgatcatcttatggttttttatgttttagctcttgcttcttgatagtgtttaatggattacaagataactgattattcttgttgaat 2206  T
Q  121 gattaat 127  Q
    |||||||    
T  2207 gattaat 2213  T

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