View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9364_low_1 (Length: 741)

Name: NF9364_low_1
Description: NF9364
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9364_low_1
NF9364_low_1
[»] chr4 (4 HSPs)
chr4 (6-262)||(14135658-14135907)
chr4 (649-728)||(54912740-54912819)
chr4 (429-512)||(14135417-14135496)
chr4 (90-179)||(35781871-35781960)
[»] chr2 (3 HSPs)
chr2 (59-215)||(15262854-15263010)
chr2 (72-179)||(39266094-39266201)
chr2 (90-159)||(33912267-33912336)
[»] chr6 (2 HSPs)
chr6 (6-112)||(17828822-17828924)
chr6 (6-111)||(4044052-4044153)
[»] chr7 (3 HSPs)
chr7 (429-512)||(33819676-33819755)
chr7 (61-142)||(33819812-33819893)
chr7 (87-118)||(33819908-33819939)
[»] chr8 (1 HSPs)
chr8 (90-179)||(23585353-23585442)
[»] chr5 (1 HSPs)
chr5 (90-179)||(41842423-41842511)
[»] scaffold0667 (1 HSPs)
scaffold0667 (90-178)||(624-712)
[»] chr3 (1 HSPs)
chr3 (90-175)||(9260727-9260812)
[»] chr1 (1 HSPs)
chr1 (90-179)||(30951409-30951498)


Alignment Details
Target: chr4 (Bit Score: 99; Significance: 2e-48; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 6 - 262
Target Start/End: Complemental strand, 14135907 - 14135658
Alignment:
Q  6 gtttggtggtcatgatagagagttaggataggaaagatatatcatatcatatatgttttaatcaattgtttgatgcaccaataggatatgataaattatt 105  Q
    ||||| |||||| |||||| | | ||||||||||| ||||||||||||     ||||||||||  ||||||||||||||||||  |||||||||||||||    
T  14135907 gtttgatggtcaggatagaaaatcaggataggaaaaatatatcatatc----ttgttttaatcctttgtttgatgcaccaataaaatatgataaattatt 14135812  T
Q  106 cctttaatttatccaatcctataactcctttgtattttatatcatga-atttaggctgggttaaaattaacctatgaggtatgatgaaggaaattctaat 204  Q
    ||||||| |||||  ||||||| ||||||||||||||| |||| |||  |||||||||||||||||||||||| | |||||  |  || ||||| |||||    
T  14135811 cctttaacttatcatatcctatcactcctttgtattttctatcctgagttttaggctgggttaaaattaacctgtcaggtaata-aaatgaaatcctaat 14135713  T
Q  205 tttgccctcacccctatcctctctacatgatcgatctcttcctctcatcttcttcttc 262  Q
    ||| ||||||||| ||||||||||||   |||||| ||||||||||||||||||||||    
T  14135712 ttttccctcacccttatcctctctac---atcgatgtcttcctctcatcttcttcttc 14135658  T

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Target: chr4; HSP #2
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 649 - 728
Target Start/End: Complemental strand, 54912819 - 54912740
Alignment:
Q  649 agacttggtagctttatggtgttgttttgaattcattttgaagtataaacaaaagatctttctaagtatttcttggatct 728  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54912819 agacttggtagctttatggtgttgttttgaattcattttgaagtataaacaaaagatctttctaagtatttcttggatct 54912740  T

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Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 429 - 512
Target Start/End: Complemental strand, 14135496 - 14135417
Alignment:
Q  429 tgaattccccttcaactcatctttttgaaacgattgatttcaattcgtttgaattcatttttgttttgtataaaattcaattcc 512  Q
    ||||||||||||||| |||||||||||||||||||    | | |||  ||||||||||||||||||||| ||||||||||||||    
T  14135496 tgaattccccttcaaatcatctttttgaaacgatt----tgagttctgttgaattcatttttgttttgtttaaaattcaattcc 14135417  T

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Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 90 - 179
Target Start/End: Complemental strand, 35781960 - 35781871
Alignment:
Q  90 gatatgataaattattcctttaatttatccaatcctataactcctttgtattttatatcatgaatttaggctgggttaaaattaacctat 179  Q
    |||| |||||||||||| ||| | ||||   ||| ||| ||||||||||||||| |||| | |||||||| |||||||||||||||||||    
T  35781960 gataggataaattattcattttacttattttatcttatcactcctttgtattttctatcctaaatttaggttgggttaaaattaacctat 35781871  T

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Target: chr2 (Bit Score: 65; Significance: 3e-28; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 59 - 215
Target Start/End: Complemental strand, 15263010 - 15262854
Alignment:
Q  59 tgttttaatcaattgtttgatgcaccaataggatatgataaattattcctttaatttatccaatcctataactcctttgtattttatatcatgaatttag 158  Q
    ||||||||||  ||||||||||||||||||| ||||||||||||||| |||| |  |||   ||||||| ||||||||||||||| |||| ||| |||      
T  15263010 tgttttaatcttttgtttgatgcaccaatagaatatgataaattatttcttttacctattatatcctatcactcctttgtattttctatcctgagtttta 15262911  T
Q  159 gctgggttaaaattaacctatgaggtatgatgaaggaaattctaattttgccctcac 215  Q
    ||||||||||||||||||||| |||| |||| || |||||  | |||||||||||||    
T  15262910 gctgggttaaaattaacctatcaggtttgataaatgaaatctttattttgccctcac 15262854  T

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Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 72 - 179
Target Start/End: Original strand, 39266094 - 39266201
Alignment:
Q  72 tgtttgatgcaccaataggatatgataaattattcctttaatttatccaatcctataactcctttgtattttatatcatgaatttaggctgggttaaaat 171  Q
    |||||| |||| ||||  |||| |||||||||||||||| | |||||  ||| ||| ||||||||| ||||| |||| | | |||| |||||||||||||    
T  39266094 tgtttggtgcagcaatgagataagataaattattccttttacttatcttatcttatcactcctttgcattttctatcctaagtttaagctgggttaaaat 39266193  T
Q  172 taacctat 179  Q
    ||||||||    
T  39266194 taacctat 39266201  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 90 - 159
Target Start/End: Complemental strand, 33912336 - 33912267
Alignment:
Q  90 gatatgataaattattcctttaatttatccaatcctataactcctttgtattttatatcatgaatttagg 159  Q
    ||||||||||||||||||||| |||||||  |||| || |||||||| |||||| |||| | ||||||||    
T  33912336 gatatgataaattattccttttatttatcttatccaatcactcctttctattttctatcctaaatttagg 33912267  T

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Target: chr6 (Bit Score: 58; Significance: 5e-24; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 6 - 112
Target Start/End: Complemental strand, 17828924 - 17828822
Alignment:
Q  6 gtttggtggtcatgatagagagttaggataggaaagatatatcatatcatatatgttttaatcaattgtttgatgcaccaataggatatgataaattatt 105  Q
    ||||| |||||| |||||||||| |||||| ||||||||||||||||    ||||||||||||  | |||||||||||||||||||||||||||||||||    
T  17828924 gtttgatggtcaggatagagagtcaggatatgaaagatatatcatat----tatgttttaatccttcgtttgatgcaccaataggatatgataaattatt 17828829  T
Q  106 cctttaa 112  Q
    | |||||    
T  17828828 catttaa 17828822  T

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Target: chr6; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 6 - 111
Target Start/End: Complemental strand, 4044153 - 4044052
Alignment:
Q  6 gtttggtggtcatgatagagagttaggataggaaagatatatcatatcatatatgttttaatcaattgtttgatgcaccaataggatatgataaattatt 105  Q
    ||||| |||| | |||||||||| |||||| |||| ||||||||||||     ||||||||||  |||||||||||||||||||||||||||||||||||    
T  4044153 gtttgatggttaggatagagagtcaggataagaaatatatatcatatc----ctgttttaatcttttgtttgatgcaccaataggatatgataaattatt 4044058  T
Q  106 ccttta 111  Q
     |||||    
T  4044057 tcttta 4044052  T

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Target: chr7 (Bit Score: 51; Significance: 8e-20; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 429 - 512
Target Start/End: Complemental strand, 33819755 - 33819676
Alignment:
Q  429 tgaattccccttcaactcatctttttgaaacgattgatttcaattcgtttgaattcatttttgttttgtataaaattcaattcc 512  Q
    |||||| |||||||| |||||||||||||||||||    ||| ||| |||||||||||||||||||||||||||||||||||||    
T  33819755 tgaatttcccttcaattcatctttttgaaacgatt----tcagttcttttgaattcatttttgttttgtataaaattcaattcc 33819676  T

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Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 61 - 142
Target Start/End: Complemental strand, 33819893 - 33819812
Alignment:
Q  61 ttttaatcaattgtttgatgcaccaataggatatgataaattattcctttaatttatccaatcctataactcctttgtattt 142  Q
    ||||||||  |||||| ||| ||||||| ||||||| ||||||||||||||| |||||  ||||||| ||||||||||||||    
T  33819893 ttttaatcttttgtttaatgtaccaataagatatgacaaattattcctttaacttatcatatcctatcactcctttgtattt 33819812  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 87 - 118
Target Start/End: Complemental strand, 33819939 - 33819908
Alignment:
Q  87 taggatatgataaattattcctttaatttatc 118  Q
    ||||||||||||||||||||||||||||||||    
T  33819939 taggatatgataaattattcctttaatttatc 33819908  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 90 - 179
Target Start/End: Original strand, 23585353 - 23585442
Alignment:
Q  90 gatatgataaattattcctttaatttatccaatcctataactcctttgtattttatatcatgaatttaggctgggttaaaattaacctat 179  Q
    |||| ||||||||||| |||| | |||||| ||||||| ||||  ||||||||| |||| | | |||||| |||||||||||||||||||    
T  23585353 gataggataaattattacttttacttatcctatcctatcactcagttgtattttctatcctaagtttaggttgggttaaaattaacctat 23585442  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 90 - 179
Target Start/End: Complemental strand, 41842511 - 41842423
Alignment:
Q  90 gatatgataaattattcctttaatttatccaatcctataactcctttgtattttatatcatgaatttaggctgggttaaaattaacctat 179  Q
    ||||| ||||||||||||||| | |||| | ||||||| ||||||||||||||| |||| | ||||| |||||| ||||||| |||||||    
T  41842511 gatataataaattattccttttacttatactatcctatcactcctttgtattttctatc-taaattttggctggattaaaatcaacctat 41842423  T

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Target: scaffold0667 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0667
Description:

Target: scaffold0667; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 90 - 178
Target Start/End: Complemental strand, 712 - 624
Alignment:
Q  90 gatatgataaattattcctttaatttatccaatcctataactcctttgtattttatatcatgaatttaggctgggttaaaattaaccta 178  Q
    |||| ||||||||| |||||| | |||| | ||| ||| ||||||||||||||| |||  | | |||||||||||||||||||||||||    
T  712 gataagataaattaatccttttacttattctatcatatcactcctttgtattttctattctaagtttaggctgggttaaaattaaccta 624  T

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Target: chr3 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 90 - 175
Target Start/End: Complemental strand, 9260812 - 9260727
Alignment:
Q  90 gatatgataaattattcctttaatttatccaatcctataactcctttgtattttatatcatgaatttaggctgggttaaaattaac 175  Q
    ||||||||||||||||| ||| | |||||  ||||||| |||  |||||||||| |||| | | ||||||||| ||||||||||||    
T  9260812 gatatgataaattattcattttacttatcatatcctatcacttttttgtattttctatcctaagtttaggctgtgttaaaattaac 9260727  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 90 - 179
Target Start/End: Original strand, 30951409 - 30951498
Alignment:
Q  90 gatatgataaattattcctttaatttatccaatcctataactcctttgtattttatatcatgaatttaggctgggttaaaattaacctat 179  Q
    |||| |||||||||||||||| | |||||  || ||||  |||||||||||||| |||| | | |||| | | |||||||||||||||||    
T  30951409 gataggataaattattccttttacttatcatatgctatcgctcctttgtattttctatcctaagtttaagttaggttaaaattaacctat 30951498  T

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