View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9364_low_11 (Length: 262)
Name: NF9364_low_11
Description: NF9364
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9364_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 177 - 242
Target Start/End: Original strand, 21787608 - 21787673
Alignment:
| Q |
177 |
catgaggagtggaaacaaagttgctgtgcatataaatgaattaaaagagcaaaattaatcatcatc |
242 |
Q |
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| T |
21787608 |
catgaggagtggaaacaaagttgctgtgcatatcaatgaattaaaagtgcaaaattaatcatcatc |
21787673 |
T |
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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 122 - 201
Target Start/End: Original strand, 21794332 - 21794412
Alignment:
| Q |
122 |
gaaacaagcattccaatccagagaattctgttgactatttgaaaaacc-taattgacatgaggagtggaaacaaagttgct |
201 |
Q |
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| T |
21794332 |
gaaacaataattcctatccaaagaattctgttaacttcttgcgaaaccctaattgacatgaggagttgaaacaacgttgct |
21794412 |
T |
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