View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9364_low_14 (Length: 254)
Name: NF9364_low_14
Description: NF9364
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9364_low_14 |
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Alignment Details
Target: chr5 (Bit Score: 237; Significance: 1e-131; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 9175511 - 9175271
Alignment:
| Q |
1 |
caatgtctacgtgtcagtgtaacgttgaatgtctgcgtcagtgcttcatagctaaatagcagtgacaactgatatttaccaatgacccattaaaagcatc |
100 |
Q |
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| T |
9175511 |
caatgtctacgtgtcagtgtaacgttgaatgtctgcgtcagtgcttcatagctaaatatcagtgacaactgatatttaccaatgacccattaaaagcatc |
9175412 |
T |
|
| Q |
101 |
tatattcaacccacattatctaccacgcaaggttctattacattgatagattaatataggaaatcaatagacaattaccttgttttttaatgtccgatca |
200 |
Q |
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| T |
9175411 |
tatattcaacccacattatctaccacgcaaggttctattacattgatagattaatataggaaatcaatagacaattaccttgttttttaatgtccgatca |
9175312 |
T |
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| Q |
201 |
gcgcctttaatcagcagaagctccactatatcaggtctctg |
241 |
Q |
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| T |
9175311 |
gcgcctttaatcagcagaagctccactatatcaggtctctg |
9175271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 42 - 241
Target Start/End: Original strand, 8650742 - 8650941
Alignment:
| Q |
42 |
tgcttcatagctaaatagcagtgacaactgatatttaccaatgacccattaaaagcatctatattcaacccacattatctaccacgcaaggttctattac |
141 |
Q |
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|||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| |
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| T |
8650742 |
tgcttcatagctaaatagcagtgacagctgataattaccaatgacccattaaaagcatctatattcaacccacgttatctaccacacaaggttctattac |
8650841 |
T |
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| Q |
142 |
attgatagattaatataggaaatcaatagacaattaccttgttttttaatgtccgatcagcgcctttaatcagcagaagctccactatatcaggtctctg |
241 |
Q |
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| T |
8650842 |
atcgatagattaatataggaaatcaatagacaattaccttgttttttaatgtctgatcagcacctttaatcagcagaagcttcactatatcagttctctg |
8650941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 8650568 - 8650676
Alignment:
| Q |
1 |
caatgtctacgtgtcagtgtaacgttgaatgtctgcgtcagtgcttcatagctaaatagcagtgacaactgata-tttaccaatgacccattaaaagcat |
99 |
Q |
| |
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|||||||| ||||||||||||| |||||||| ||| |||||| ||| || |||||| |||||||| |||||| |||||||| |||||| |||||||| |
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| T |
8650568 |
caatgtctgcgtgtcagtgtaatgttgaatgcctgtgtcagtactttgtacgtaaataccagtgacagctgatattttaccaacgacccactaaaagcac |
8650667 |
T |
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| Q |
100 |
ctatattca |
108 |
Q |
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||||||||| |
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| T |
8650668 |
ctatattca |
8650676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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