View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9364_low_15 (Length: 242)
Name: NF9364_low_15
Description: NF9364
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9364_low_15 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 16 - 235
Target Start/End: Complemental strand, 964376 - 964157
Alignment:
| Q |
16 |
catgaacaggctgtactagcattgttagagtcctgaattttgagtattcacannnnnnngtgaacaaattgatggatggctcatttgtacaatcagttgc |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
964376 |
catgaacaggctgtactagcattgttagagtcctgaattttgagtattcacatttttttgtgaacagattgatggatggctcatttgtacaatcagttgc |
964277 |
T |
|
| Q |
116 |
catatatgcatacttagcccctttttgcttgcaccactcttctaaatgttcaactaattttgtgccaatgccaaatctcctgtatatgccaagacaatct |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
964276 |
catatatgcatacttagcccctttttgcttgcaccactcttctaaatgttcaactaattttgtgccaatgccaaatctcctgtatatgccaagacaatct |
964177 |
T |
|
| Q |
216 |
tttagttattagtataatct |
235 |
Q |
| |
|
||||||||||||| |||||| |
|
|
| T |
964176 |
tttagttattagtttaatct |
964157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University