View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9364_low_3 (Length: 403)
Name: NF9364_low_3
Description: NF9364
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9364_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 322; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 18 - 391
Target Start/End: Complemental strand, 29612598 - 29612225
Alignment:
| Q |
18 |
caaagcttatgtaagtttttagttgagcatattttgtggagggtgagagctgctttacatacaatatggtgctaaagatagccaaggaaaacaccacata |
117 |
Q |
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| T |
29612598 |
caaagcttatgtaagtttttagttgagcatattttgtggatggtgagaactgctttacaaacaatatggtggtaaagatagccaaggaaaacactccata |
29612499 |
T |
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| Q |
118 |
cagagagattttgaaaatgttccatcttccaattaaacgattgaaagaagggctctgaggataacacaataggccaaatacacttgacacaaggccaact |
217 |
Q |
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| T |
29612498 |
cagagagaacttgacaatgttccatcttccaattaaacgattgaaagaagggctctgagcataacacaataggccaaatacacttgacacaaggccaact |
29612399 |
T |
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| Q |
218 |
agtctccataatgcgttgccactagaaaccttccatgaaatctcaatatctcccacaacattctgaaaattctgcaatataacaagaattcagtaatgtt |
317 |
Q |
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| T |
29612398 |
agtctccaaaatgcgttgccactagaaaccttcgatgaaatctgaatatctcccacaacattctgaaaattctgcaatataacaagaattcagtaatgtt |
29612299 |
T |
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| Q |
318 |
tgccatgtgtttgtatgaggggattttatgacctaatatatgtaatttaaaaaagtgattcactggttaagaat |
391 |
Q |
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| T |
29612298 |
tgccatgtgtttgtatgaggggattttatgacctaatatatgtaatttaaaaaagtgattcactggttaagaat |
29612225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 52 - 225
Target Start/End: Complemental strand, 29524775 - 29524602
Alignment:
| Q |
52 |
tgtggagggtgagagctgctttacatacaatatggtgctaaagatagccaaggaaaacaccacatacagagagattttgaaaatgttccatcttccaatt |
151 |
Q |
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| T |
29524775 |
tgtggatgttgagaacggctttacaaacaacatggtagtaaagataaccaaggaaaacaccccatacagaaagaacttgagagtgttccattttccaatg |
29524676 |
T |
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| Q |
152 |
aaacgattgaaagaagggctctgaggataacacaataggccaaatacacttgacacaaggccaactagtctcca |
225 |
Q |
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| T |
29524675 |
aaacgattgaaagaatggctctgagcattacataataggcctactacacttgacacaattccaactattctcca |
29524602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 137 - 225
Target Start/End: Original strand, 29528989 - 29529077
Alignment:
| Q |
137 |
ttccatcttccaattaaacgattgaaagaagggctctgaggataacacaataggccaaatacacttgacacaaggccaactagtctcca |
225 |
Q |
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| T |
29528989 |
ttccaccttccaattaatcgattgaaagaagggctcagagcataacataacaggccaactacacttgacataagcccaactactctcca |
29529077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 78 - 226
Target Start/End: Original strand, 29475254 - 29475402
Alignment:
| Q |
78 |
acaatatggtgctaaagatagccaaggaaaacaccacatacagagagattttgaaaatgttccatcttccaattaaacgattgaaagaagggctctgagg |
177 |
Q |
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| T |
29475254 |
acaatatggtggtgaagatagctaaggacaacaccccataaagaaagatctggaaagctttcaattttccaattaatcgattgaaagaagggctcagagc |
29475353 |
T |
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| Q |
178 |
ataacacaataggccaaatacacttgacacaaggccaactagtctccat |
226 |
Q |
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| T |
29475354 |
ataacaaaccagaccgactatacttgacataaggccaactactctccat |
29475402 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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