View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9364_low_5 (Length: 360)
Name: NF9364_low_5
Description: NF9364
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9364_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 268; Significance: 1e-149; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 15 - 345
Target Start/End: Original strand, 44945652 - 44946003
Alignment:
| Q |
15 |
aagggaccaagagtgactagcacgattcaatgtcttagcaatatattccatatatgcctttttatctctgagtgttggcgcgttgattaaaaagctgaca |
114 |
Q |
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| T |
44945652 |
aagggaccaggagtaactagcgcgattcaatgtcttagcaatatattccatatatgcctttttatctctgagtgttggcgcgttgattaaaaagctgaca |
44945751 |
T |
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| Q |
115 |
tgacaatagcatcttatagactgaacattgcataaaaatgcaacaaggaagcagatggtaatcgaaatgtgtttgattgaagaattactttgaagtatgg |
214 |
Q |
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| T |
44945752 |
tgacaatagcatcttatagactgaacattgcataaaaatgcaacaaggaagcagatggtaatcgaaatgtgtttgattgaagaagtactttgaagtatgg |
44945851 |
T |
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| Q |
215 |
aagat---------------------gaactgctagcaaaaattccaataagtgaacttagtgtgatagctgttgtagaaagaagagtagacgccatgat |
293 |
Q |
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| T |
44945852 |
aagatgatgtatcatcagaactccacgaactgctagcaaaaattccaataagtgaacttagtgtgatagctgttgtagaaagaagagtagacgccatgat |
44945951 |
T |
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| Q |
294 |
attgttgcggattgtttggatcgccaaaacaccgttcttggagggatcctga |
345 |
Q |
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| T |
44945952 |
attgttgcggattgtttggatcgccaaaacaccgttcttggagggatcctga |
44946003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 15 - 345
Target Start/End: Original strand, 44943998 - 44944346
Alignment:
| Q |
15 |
aagggaccaagagtgactagcacgattcaatgtcttagcaatatattccatatatgcctttttatctctgagtgttggcgcgttgattaaaaagctgaca |
114 |
Q |
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| T |
44943998 |
aagggaccaagagtgactagcacgattcaatgtcttagcaatatattccatatatgcctttttatctcggagtgtaggtgcggtgattaaaaaactgaca |
44944097 |
T |
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| Q |
115 |
tgacaatagcatcttatagactgaacattgcataaaaatgcaacaaggaagcagatggtaatcgaaatgtgtttgattgaagaattactttgaagtatgg |
214 |
Q |
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| T |
44944098 |
tgacaatagcaccttatagactgaacattgcataaaaatgcaacaaggaagcaaatggtaatcgaaatacgtttgattgaagaagtactttgaagtatgg |
44944197 |
T |
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| Q |
215 |
aag------------------atgaactgctagcaaaaattccaataagtgaacttagtgtgatagctgttgtagaaagaagagtagacgccatgatatt |
296 |
Q |
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| T |
44944198 |
aagatgtatcatcagaactccatgaactgctagcaaaaattccaataagtgaacttaatgtgattgctgttgtagcaagaagattagacgccatgatatt |
44944297 |
T |
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| Q |
297 |
gttgcggattgtttggatcgccaaaacaccgttcttggagggatcctga |
345 |
Q |
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| T |
44944298 |
gttgcggatagtttggacccccaaaacaccgttcttgaagggatcctga |
44944346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 224 - 311
Target Start/End: Original strand, 44941059 - 44941146
Alignment:
| Q |
224 |
tgctagcaaaaattccaataagtgaacttagtgtgatagctgttgtagaaagaagagtagacgccatgatattgttgcggattgtttg |
311 |
Q |
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| T |
44941059 |
tgcttgcaaaaactccaattagtgaacttagtgtgattgctgttgtagctagtagagtagatgccattatattgttgcggattgtttg |
44941146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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