View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9364_low_7 (Length: 321)

Name: NF9364_low_7
Description: NF9364
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9364_low_7
NF9364_low_7
[»] chr8 (2 HSPs)
chr8 (123-170)||(29270670-29270717)
chr8 (19-97)||(29270557-29270635)
[»] chr6 (21 HSPs)
chr6 (126-173)||(27674374-27674421)
chr6 (123-180)||(27682238-27682295)
chr6 (123-180)||(27715331-27715388)
chr6 (123-170)||(27607950-27607997)
chr6 (123-173)||(27589947-27589997)
chr6 (128-189)||(27695403-27695464)
chr6 (123-163)||(25486668-25486708)
chr6 (124-163)||(26059223-26059262)
chr6 (124-163)||(26079193-26079232)
chr6 (123-173)||(27657544-27657594)
chr6 (19-68)||(27695318-27695367)
chr6 (123-163)||(25514161-25514201)
chr6 (123-163)||(26146295-26146335)
chr6 (128-163)||(25583014-25583049)
chr6 (19-66)||(27682328-27682375)
chr6 (123-173)||(26805825-26805875)
chr6 (19-68)||(27589861-27589910)
chr6 (19-68)||(27674285-27674334)
chr6 (19-68)||(27715251-27715300)
chr6 (273-307)||(27674518-27674552)
chr6 (19-68)||(27607837-27607886)
[»] chr1 (2 HSPs)
chr1 (124-189)||(265145-265210)
chr1 (124-172)||(26139328-26139376)
[»] scaffold0349 (2 HSPs)
scaffold0349 (123-180)||(16557-16613)
scaffold0349 (19-68)||(16644-16693)
[»] chr4 (4 HSPs)
chr4 (126-173)||(18686451-18686498)
chr4 (126-173)||(18696257-18696304)
chr4 (124-173)||(18676409-18676458)
chr4 (126-162)||(18652350-18652386)
[»] scaffold0277 (1 HSPs)
scaffold0277 (133-173)||(1524-1564)


Alignment Details
Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 123 - 170
Target Start/End: Original strand, 29270670 - 29270717
Alignment:
Q  123 caacttaaactccacatggatccattcatttttcaaaagtcctttctc 170  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  29270670 caacttaaactccacatggatccattcatttttcaaaagtcctttctc 29270717  T

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Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 19 - 97
Target Start/End: Original strand, 29270557 - 29270635
Alignment:
Q  19 acattctcctcctccgtgtttttgttctcattccacacgtggattcccatctctacatcactaaatattttattattct 97  Q
    ||||||||||| ||||||||  | |||||||||||||||||||||||||| |  ||| |||| ||||||||||||||||    
T  29270557 acattctcctcatccgtgttgcttttctcattccacacgtggattcccatttgaacaccacttaatattttattattct 29270635  T

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Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 21)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 126 - 173
Target Start/End: Original strand, 27674374 - 27674421
Alignment:
Q  126 cttaaactccacatggatccattcatttttcaaaagtcctttctccat 173  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  27674374 cttaaactccacatggatccattcatttttcaaaagtcctttctccat 27674421  T

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Target: chr6; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 123 - 180
Target Start/End: Complemental strand, 27682295 - 27682238
Alignment:
Q  123 caacttaaactccacatggatccattcatttttcaaaagtcctttctccatgttatac 180  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||| || ||||||    
T  27682295 caacttaaactccacatagatccattcatttttcaaaagtcctttctctatattatac 27682238  T

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Target: chr6; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 123 - 180
Target Start/End: Original strand, 27715331 - 27715388
Alignment:
Q  123 caacttaaactccacatggatccattcatttttcaaaagtcctttctccatgttatac 180  Q
    |||||||||||||||||||||||||||| |||||||||||||||| ||||| ||||||    
T  27715331 caacttaaactccacatggatccattcacttttcaaaagtcctttgtccatattatac 27715388  T

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Target: chr6; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 123 - 170
Target Start/End: Original strand, 27607950 - 27607997
Alignment:
Q  123 caacttaaactccacatggatccattcatttttcaaaagtcctttctc 170  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||    
T  27607950 caacttaaactccacatggatccattcatttttcaaaagttctttctc 27607997  T

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Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 123 - 173
Target Start/End: Original strand, 27589947 - 27589997
Alignment:
Q  123 caacttaaactccacatggatccattcatttttcaaaagtcctttctccat 173  Q
    ||||||||| ||||||||||||||||||||||||||||||||||| |||||    
T  27589947 caacttaaattccacatggatccattcatttttcaaaagtcctttgtccat 27589997  T

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Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 128 - 189
Target Start/End: Original strand, 27695403 - 27695464
Alignment:
Q  128 taaactccacatggatccattcatttttcaaaagtcctttctccatgttatacccgtgttgt 189  Q
    ||||||||||||||||||||||| |||||||||||||||| ||||| ||||||  |||||||    
T  27695403 taaactccacatggatccattcacttttcaaaagtcctttgtccatattatacatgtgttgt 27695464  T

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Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 123 - 163
Target Start/End: Complemental strand, 25486708 - 25486668
Alignment:
Q  123 caacttaaactccacatggatccattcatttttcaaaagtc 163  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  25486708 caacttaaactccacatggatccattcatttttcaaaagtc 25486668  T

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Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 124 - 163
Target Start/End: Complemental strand, 26059262 - 26059223
Alignment:
Q  124 aacttaaactccacatggatccattcatttttcaaaagtc 163  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  26059262 aacttaaactccacatggatccattcatttttcaaaagtc 26059223  T

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Target: chr6; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 124 - 163
Target Start/End: Complemental strand, 26079232 - 26079193
Alignment:
Q  124 aacttaaactccacatggatccattcatttttcaaaagtc 163  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  26079232 aacttaaactccacatggatccattcatttttcaaaagtc 26079193  T

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Target: chr6; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 123 - 173
Target Start/End: Original strand, 27657544 - 27657594
Alignment:
Q  123 caacttaaactccacatggatccattcatttttcaaaagtcctttctccat 173  Q
    |||||||| ||||||||||||||||||||||||||||||| |||| |||||    
T  27657544 caacttaagctccacatggatccattcatttttcaaaagttctttgtccat 27657594  T

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Target: chr6; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 68
Target Start/End: Original strand, 27695318 - 27695367
Alignment:
Q  19 acattctcctcctccgtgtttttgttctcattccacacgtggattcccat 68  Q
    ||||||||||||||||||||  | ||||||||||||||||||||||||||    
T  27695318 acattctcctcctccgtgttgcttttctcattccacacgtggattcccat 27695367  T

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Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 123 - 163
Target Start/End: Complemental strand, 25514201 - 25514161
Alignment:
Q  123 caacttaaactccacatggatccattcatttttcaaaagtc 163  Q
    |||||||||||||||||| ||||||||||||||||||||||    
T  25514201 caacttaaactccacatgtatccattcatttttcaaaagtc 25514161  T

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Target: chr6; HSP #13
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 123 - 163
Target Start/End: Complemental strand, 26146335 - 26146295
Alignment:
Q  123 caacttaaactccacatggatccattcatttttcaaaagtc 163  Q
    ||||||||||||||||||||||||||| |||||||||||||    
T  26146335 caacttaaactccacatggatccattcctttttcaaaagtc 26146295  T

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Target: chr6; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 128 - 163
Target Start/End: Complemental strand, 25583049 - 25583014
Alignment:
Q  128 taaactccacatggatccattcatttttcaaaagtc 163  Q
    ||||||||||||||||||||||||||||||||||||    
T  25583049 taaactccacatggatccattcatttttcaaaagtc 25583014  T

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Target: chr6; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 66
Target Start/End: Complemental strand, 27682375 - 27682328
Alignment:
Q  19 acattctcctcctccgtgtttttgttctcattccacacgtggattccc 66  Q
    ||||||||||||||||||||  | ||||||||||||||||||||||||    
T  27682375 acattctcctcctccgtgttgcttttctcattccacacgtggattccc 27682328  T

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Target: chr6; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 123 - 173
Target Start/End: Complemental strand, 26805875 - 26805825
Alignment:
Q  123 caacttaaactccacatggatccattcatttttcaaaagtcctttctccat 173  Q
    |||||||| ||||||||||||||||||||||||| ||||| |||| |||||    
T  26805875 caacttaagctccacatggatccattcatttttcgaaagtactttgtccat 26805825  T

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Target: chr6; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 19 - 68
Target Start/End: Original strand, 27589861 - 27589910
Alignment:
Q  19 acattctcctcctccgtgtttttgttctcattccacacgtggattcccat 68  Q
    ||||||||||||||||||||  | ||||| ||||||||||||||||||||    
T  27589861 acattctcctcctccgtgttgcttttctctttccacacgtggattcccat 27589910  T

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Target: chr6; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 19 - 68
Target Start/End: Original strand, 27674285 - 27674334
Alignment:
Q  19 acattctcctcctccgtgtttttgttctcattccacacgtggattcccat 68  Q
    ||||||||||||||||||||  | ||||| ||||||||||||||||||||    
T  27674285 acattctcctcctccgtgttgcttttctctttccacacgtggattcccat 27674334  T

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Target: chr6; HSP #19
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 19 - 68
Target Start/End: Original strand, 27715251 - 27715300
Alignment:
Q  19 acattctcctcctccgtgtttttgttctcattccacacgtggattcccat 68  Q
    ||||||||||||||||||||  | ||||||||||||||||||| ||||||    
T  27715251 acattctcctcctccgtgttgcttttctcattccacacgtggactcccat 27715300  T

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Target: chr6; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 273 - 307
Target Start/End: Original strand, 27674518 - 27674552
Alignment:
Q  273 atctatctcaattttatatccattcacaaaataat 307  Q
    |||||||||||||| ||||||||||||||||||||    
T  27674518 atctatctcaatttcatatccattcacaaaataat 27674552  T

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Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 68
Target Start/End: Original strand, 27607837 - 27607886
Alignment:
Q  19 acattctcctcctccgtgtttttgttctcattccacacgtggattcccat 68  Q
    ||||||| |||||| |||||  | ||||||||||||||||||||||||||    
T  27607837 acattcttctcctctgtgttgcttttctcattccacacgtggattcccat 27607886  T

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Target: chr1 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 124 - 189
Target Start/End: Original strand, 265145 - 265210
Alignment:
Q  124 aacttaaactccacatggatccattcatttttcaaaagtcctttctccatgttatacccgtgttgt 189  Q
    |||||||| |||| |||||||||||||||||||||||||||||| ||||| |||||| ||| ||||    
T  265145 aacttaaattccaaatggatccattcatttttcaaaagtcctttgtccatattatactcgtattgt 265210  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 124 - 172
Target Start/End: Complemental strand, 26139376 - 26139328
Alignment:
Q  124 aacttaaactccacatggatccattcatttttcaaaagtcctttctcca 172  Q
    ||||||| ||| |||||||||||||||||||| |||||| ||| |||||    
T  26139376 aacttaagctctacatggatccattcattttttaaaagtgcttcctcca 26139328  T

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Target: scaffold0349 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 123 - 180
Target Start/End: Complemental strand, 16613 - 16557
Alignment:
Q  123 caacttaaactccacatggatccattcatttttcaaaagtcctttctccatgttatac 180  Q
    |||||||||||||||||||||||||||| ||||| |||||||||| ||||| ||||||    
T  16613 caacttaaactccacatggatccattcacttttc-aaagtcctttgtccatattatac 16557  T

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Target: scaffold0349; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 19 - 68
Target Start/End: Complemental strand, 16693 - 16644
Alignment:
Q  19 acattctcctcctccgtgtttttgttctcattccacacgtggattcccat 68  Q
    ||||||||||||||||||||  | ||||||||||||||||||| ||||||    
T  16693 acattctcctcctccgtgttgcttttctcattccacacgtggactcccat 16644  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000007; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 126 - 173
Target Start/End: Original strand, 18686451 - 18686498
Alignment:
Q  126 cttaaactccacatggatccattcatttttcaaaagtcctttctccat 173  Q
    |||||||||||||| ||||||||||||||| |||||| |||| |||||    
T  18686451 cttaaactccacatagatccattcattttttaaaagtgctttgtccat 18686498  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 126 - 173
Target Start/End: Original strand, 18696257 - 18696304
Alignment:
Q  126 cttaaactccacatggatccattcatttttcaaaagtcctttctccat 173  Q
    |||||||||||||| ||||||||||||||| |||||| |||| |||||    
T  18696257 cttaaactccacattgatccattcattttttaaaagtgctttgtccat 18696304  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 124 - 173
Target Start/End: Original strand, 18676409 - 18676458
Alignment:
Q  124 aacttaaactccacatggatccattcatttttcaaaagtcctttctccat 173  Q
    ||||| |||||||||| ||||||||||||||| |||||| |||| |||||    
T  18676409 aacttcaactccacatagatccattcattttttaaaagtgctttgtccat 18676458  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 126 - 162
Target Start/End: Original strand, 18652350 - 18652386
Alignment:
Q  126 cttaaactccacatggatccattcatttttcaaaagt 162  Q
    |||||||||||||| ||||||||||||||| ||||||    
T  18652350 cttaaactccacatagatccattcattttttaaaagt 18652386  T

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Target: scaffold0277 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 133 - 173
Target Start/End: Original strand, 1524 - 1564
Alignment:
Q  133 tccacatggatccattcatttttcaaaagtcctttctccat 173  Q
    ||||||||||||||||||||||| |||||| |||| |||||    
T  1524 tccacatggatccattcattttttaaaagtgctttttccat 1564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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