View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9365_high_12 (Length: 221)

Name: NF9365_high_12
Description: NF9365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9365_high_12
NF9365_high_12
[»] chr6 (2 HSPs)
chr6 (76-206)||(13328988-13329114)
chr6 (124-211)||(1217506-1217591)
[»] chr1 (2 HSPs)
chr1 (76-205)||(25713113-25713238)
chr1 (181-221)||(18416260-18416299)
[»] chr2 (3 HSPs)
chr2 (76-175)||(30701262-30701364)
chr2 (135-175)||(30701404-30701444)
chr2 (135-175)||(30701484-30701524)
[»] chr8 (1 HSPs)
chr8 (105-212)||(37001056-37001158)


Alignment Details
Target: chr6 (Bit Score: 82; Significance: 7e-39; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 76 - 206
Target Start/End: Original strand, 13328988 - 13329114
Alignment:
Q  76 aataatttagattgaataactcattcattacaatgatgtatgcacacttatatacac---agaatctctcacgaaaacataaataaggaaactaaatcaa 172  Q
    ||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||   ||||||||||| ||||||||||||||||||||||||||||    
T  13328988 aataatttaaattgaataactcattcattacaatgacgtatgcacacttatatacacgagagaatctctcaagaaaacataaataaggaaactaaatcaa 13329087  T
Q  173 gcacacaatataataagtagagaataatcaacac 206  Q
    ||       |||||||||||||||||||||||||    
T  13329088 gc-------ataataagtagagaataatcaacac 13329114  T

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Target: chr6; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 124 - 211
Target Start/End: Original strand, 1217506 - 1217591
Alignment:
Q  124 tatatacacagaatctctcacgaaaacataaataaggaaactaaatcaagcacacaatataataagtagagaataatcaacactcccc 211  Q
    |||| ||| ||||||||||| |||||||||||||||||||||||||||||  |||| |||||||||||||||||||||||||||||||    
T  1217506 tatacacagagaatctctcaagaaaacataaataaggaaactaaatcaag--cacagtataataagtagagaataatcaacactcccc 1217591  T

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Target: chr1 (Bit Score: 69; Significance: 4e-31; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 76 - 205
Target Start/End: Complemental strand, 25713238 - 25713113
Alignment:
Q  76 aataatttagattgaataactcattcattacaatgatgtatgcacacttatatacac---agaatctctcacgaaaacataaataaggaaactaaatcaa 172  Q
    ||||||||||||||||||||||    |||||||||||||||||||||||||||||||   ||||||||||| ||||||||||||||||||||||| ||||    
T  25713238 aataatttagattgaataactctaatattacaatgatgtatgcacacttatatacacgagagaatctctcaagaaaacataaataaggaaactaagtcaa 25713139  T
Q  173 gcacacaatataataagtagagaataatcaaca 205  Q
    ||       ||||||||||||||||||||||||    
T  25713138 gc-------ataataagtagagaataatcaaca 25713113  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 221
Target Start/End: Original strand, 18416260 - 18416299
Alignment:
Q  181 tataataagtagagaataatcaacactcccccctcaagttg 221  Q
    |||||||| |||||||||||||||||| |||||||||||||    
T  18416260 tataataaatagagaataatcaacact-ccccctcaagttg 18416299  T

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Target: chr2 (Bit Score: 45; Significance: 8e-17; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 76 - 175
Target Start/End: Original strand, 30701262 - 30701364
Alignment:
Q  76 aataatttagattgaataactcattcattacaatgatgtatgcacacttatatacaca---gaatctctcacgaaaacataaataaggaaactaaatcaa 172  Q
    |||||||||||||||||||||  |  |||||||| |||| ||||| |||| |||||||   |||||||||| |||| |||||||||| ||||||||||||    
T  30701262 aataatttagattgaataacttgtatattacaataatgtgtgcactcttacatacacaagagaatctctcaagaaagcataaataagaaaactaaatcaa 30701361  T
Q  173 gca 175  Q
    |||    
T  30701362 gca 30701364  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 135 - 175
Target Start/End: Original strand, 30701404 - 30701444
Alignment:
Q  135 aatctctcacgaaaacataaataaggaaactaaatcaagca 175  Q
    ||||||||| |||| ||||||||||||||||||||||||||    
T  30701404 aatctctcaagaaagcataaataaggaaactaaatcaagca 30701444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 175
Target Start/End: Original strand, 30701484 - 30701524
Alignment:
Q  135 aatctctcacgaaaacataaataaggaaactaaatcaagca 175  Q
    ||||||||| |||| ||||||||| ||||||||||||||||    
T  30701484 aatctctcaagaaagcataaataaagaaactaaatcaagca 30701524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 105 - 212
Target Start/End: Complemental strand, 37001158 - 37001056
Alignment:
Q  105 acaatgatgtatgcacacttatatacac---agaatctctcacgaaaacataaataaggaaactaaatcaagcacacaatataataagtagagaataatc 201  Q
    |||||||||||||||  ||||||||||    ||||||||||| ||||||| |||||||||||||||||||| |       ||||||| ||||||||||||    
T  37001158 acaatgatgtatgcaagcttatatacaagagagaatctctcatgaaaaca-aaataaggaaactaaatcaacc-------ataataaatagagaataatc 37001067  T
Q  202 aacactccccc 212  Q
    |||||||||||    
T  37001066 aacactccccc 37001056  T

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