View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9365_high_3 (Length: 485)
Name: NF9365_high_3
Description: NF9365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9365_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 5 - 296
Target Start/End: Complemental strand, 6361663 - 6361373
Alignment:
| Q |
5 |
gtttggtgtttaataatccattatggacgaattgtttgagataacataagttcgaatcatgacaataataatttttggtaaaacttaaattacttctcaa |
104 |
Q |
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| T |
6361663 |
gtttagtgtttaataatccattatgaacgaattgtttgagataacataagttcgaatcatgacaataataatttttggtaagacttaaattacttctcaa |
6361564 |
T |
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| Q |
105 |
tcaagctttggattatcaagtcttttttacaagaaaccagaggctaagaccnnnnnnncttacttggaacaagtttggattagttgtggatttnnnnnnn |
204 |
Q |
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| T |
6361563 |
tcaaactttggattatcaagttttttttacaagaaaccagaggataagaccaaaaaaacttacttggaacaagtttggattagttgtggattttaaaaaa |
6361464 |
T |
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| Q |
205 |
nntaatcatttgaaacaaaaactacaatttagagcttcaacaaaattaatgtatcaccgtaatttttaactcattgcaagtccaagtgttca |
296 |
Q |
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| T |
6361463 |
aaaaatcatttgaaacaaaaactacaatttagagcttcaacaaaattaacatatcacc-taatttttaactcattgcaagtccaagtgttca |
6361373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 293 - 468
Target Start/End: Complemental strand, 6361291 - 6361116
Alignment:
| Q |
293 |
ttcattctttaagtattactatgtacgtaattaggtgtccaaaatttgaaagagtggttacctgatgcatagggctgcttgctaggactccatggttgca |
392 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6361291 |
ttcattctttaagtattactatgtaggtaattaggtgtccaaaatttgaaagagtggttacctgatgcatagggctgcttgctaggactccatggttgca |
6361192 |
T |
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| Q |
393 |
atccatttttacagtatgtctccatttgcaccttcaatgcattaacatcccaccatttcttccacctagcagttgc |
468 |
Q |
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| T |
6361191 |
atccatttttacagtatgtctccatttgcaccttcaatgcattaacatcccaccatttcttccacctagcagttgc |
6361116 |
T |
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