View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9365_low_1 (Length: 541)
Name: NF9365_low_1
Description: NF9365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9365_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 500; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 500; E-Value: 0
Query Start/End: Original strand, 17 - 532
Target Start/End: Original strand, 45682613 - 45683128
Alignment:
| Q |
17 |
caacttgttccctttccttttcagagagttcacggaatgtctttccttcaattatatttggctcaactgcatcttcaactgaaaccagtattccgcactc |
116 |
Q |
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| T |
45682613 |
caacttgttccctttccttttcagagagttcacggaatgtctttccttcaattatatttggctcaactgcatcttcaactgaaaccagtattccgcactc |
45682712 |
T |
|
| Q |
117 |
caaagatattgcttttgctgtttgaagattatccccagtaaccatgcgtacctatgggttcacagttcacacacatacgatgtgttgggatctcttgatt |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||| |
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| T |
45682713 |
caaagatattgcttttgctgtttgaagattatccccagtaaccatgcgtacctatgggttcacaattcacacacataagatgtgttgggatctcttgatt |
45682812 |
T |
|
| Q |
217 |
ttagatttttgagaaatactcatgcaagttatgaagtcaaagccatgttctaacactgtccttaatgatttcaatgaaatgaaatctaaatatgacgata |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45682813 |
ttagatttttgagaaatactcatgcaagttatgaagtcaaagccatgttctaacactgtccttaatgatttcaatgaaatgaaatctaaatatgacgata |
45682912 |
T |
|
| Q |
317 |
tctagttattggattcgattgatatgaaaactttaccttaacaccagcctcagtgcataatctcacagcctctttgactccagggcgacaaggatcctgg |
416 |
Q |
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| T |
45682913 |
tctagttatttgattcgatcgatatgaaaactttaccttaacaccagcctcagtgcataatctcacagcctctttgactccagggcgacaaggatcctgg |
45683012 |
T |
|
| Q |
417 |
acattcagatgaaagaattttagaaggaatatacaggattaatttgaaagcataaagacaaagcgagctacagaacatgatacttaacaacaacatatta |
516 |
Q |
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| T |
45683013 |
acattcagatgaaagaattttagaaggaatatacaggattaatttgaaagcataaagacaaagcgagctacagaacatgatacttaacaacaacatatta |
45683112 |
T |
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| Q |
517 |
tgtactaaagaataat |
532 |
Q |
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| T |
45683113 |
tgtactaaagaataat |
45683128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 61; Significance: 6e-26; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 17 - 169
Target Start/End: Complemental strand, 1444791 - 1444639
Alignment:
| Q |
17 |
caacttgttccctttccttttcagagagttcacggaatgtctttccttcaattatatttggctcaactgcatcttcaactgaaaccagtattccgcactc |
116 |
Q |
| |
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|||| ||||||||||| |||||||| || || || ||| |||||||||||||||| ||| |||||||| |||||| |||| ||||||| || ||||| |
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| T |
1444791 |
caacctgttccctttctttttcagatagctcccgaaatacctttccttcaattatacatggatcaactgcttcttcatttgaagccagtatcccacactc |
1444692 |
T |
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| Q |
117 |
caaagatattgcttttgctgtttgaagattatccccagtaaccatgcgtacct |
169 |
Q |
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|| || |||||| |||||||||||||| || || ||||||||||||||||||| |
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| T |
1444691 |
cagagctattgcctttgctgtttgaaggttgtctccagtaaccatgcgtacct |
1444639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 349 - 415
Target Start/End: Complemental strand, 1444489 - 1444423
Alignment:
| Q |
349 |
ttaccttaacaccagcctcagtgcataatctcacagcctctttgactccagggcgacaaggatcctg |
415 |
Q |
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|||||||||||||||| |||||||||| |||||| || |||||||| |||||||||||||||||||| |
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| T |
1444489 |
ttaccttaacaccagcgtcagtgcatattctcacggcatctttgacaccagggcgacaaggatcctg |
1444423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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