View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9365_low_12 (Length: 385)
Name: NF9365_low_12
Description: NF9365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9365_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 147 - 372
Target Start/End: Complemental strand, 45370814 - 45370593
Alignment:
| Q |
147 |
cgcttacttgaagagcttgggatggtgtagagttcgagttctgaatctgaaattgggtcttttgagccttccatgctaaaatgcgccggaggggaatgat |
246 |
Q |
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| T |
45370814 |
cgcttacttgaagagcttgggatggtgtagagttcgagttctgaatctgaaattgggtcttttgagccttccatgctaaaatgcgccggaggggaatgat |
45370715 |
T |
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| Q |
247 |
gttgatctatagagaaaaacgaagcataaaaccacctattgattgatcagtcagtggaatgatggaggtagaagtgtatgaacaagagtcagtgaactaa |
346 |
Q |
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| T |
45370714 |
gttgatctatagagaaaaacgaagcataaaaccacctat----tgatcagtcagtggaatgatggaggtagaagtgtatgaacaagagtcagtgaactaa |
45370619 |
T |
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| Q |
347 |
ccgtaataatagtggacgaatgaatt |
372 |
Q |
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| T |
45370618 |
ccgtaataatagtggacgaatgaatt |
45370593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 1 - 123
Target Start/End: Complemental strand, 45370962 - 45370840
Alignment:
| Q |
1 |
tccgtcgaaatactctttgaatgcggttttctctgtttcgtgaatttcgtcccacgcgaaccattctgcaaaaacgacacagtttagattgtaatgtgtt |
100 |
Q |
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| T |
45370962 |
tccgtcgaaatactctttgaatgcggttttctctgtttcgtgaatttcgtcccacgcgaaccattctgcaaaaacgacacagtttagattgtaatgtgtt |
45370863 |
T |
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| Q |
101 |
aattaacggagttagggttttgg |
123 |
Q |
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| T |
45370862 |
aattaacggagttagggttttgg |
45370840 |
T |
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