View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9365_low_18 (Length: 297)
Name: NF9365_low_18
Description: NF9365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9365_low_18 |
 | |
|
| [»] scaffold0006 (1 HSPs) |
| | |
|
| [»] scaffold0197 (1 HSPs) |
| | |
|
| [»] scaffold0078 (1 HSPs) |
| | |
|
| [»] scaffold0842 (1 HSPs) |
| | |
|
| [»] scaffold0028 (1 HSPs) |
| | |
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| [»] scaffold0188 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 239; Significance: 1e-132; HSPs: 9)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 3 - 285
Target Start/End: Original strand, 5818278 - 5818560
Alignment:
| Q |
3 |
tggtggttcttccgttcaagttgtggtgacgtccaatgaagatggttatgagagtgcgggtgcattagtggttacaagttgggaactggagaagaggtgg |
102 |
Q |
| |
|
||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||| |
|
|
| T |
5818278 |
tggtggttcttccgttcaaactgtggtgacgtctaatgaagatggttatgagagtgcgggtgcattagtggtcacaagttgggaaccggagaagaggtgg |
5818377 |
T |
|
| Q |
103 |
gttttggactcggggtgttttttcacatgtgtcataggaaggaatattttgagactttggctctaaaagaaggaggagttgttcgactcggaaataacaa |
202 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5818378 |
gttttggactcggggtgttttttcacatgtgtcctaggaagaaatattttgagactttggctctaaaagaaggaggagttgttcgactcggaaataacaa |
5818477 |
T |
|
| Q |
203 |
aacttgcaaagtccaaggcatgggatccattcgtctaaagatgtttgatggtcgtgaattccttctcacggatgtgacgtttg |
285 |
Q |
| |
|
||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
5818478 |
aacttgcaaagtccaaggcatgggaaacgttcgtctaaagatgtttgatggtcgtgaattccttctaacggatgtgacgtttg |
5818560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 37 - 285
Target Start/End: Complemental strand, 21644998 - 21644749
Alignment:
| Q |
37 |
aatgaagatggttatgagagtgcgggtgcattagtggttacaagttgggaactggagaagaggtgggttttggactcggggtgttttttc-acatgtgtc |
135 |
Q |
| |
|
|||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| || | || | ||||||||| |
|
|
| T |
21644998 |
aatgaagaaggttatgagagtgcgggtgcactagtggttacaagttgggaactggagaagagttgggttttggactcgggatgctcttaccacatgtgtc |
21644899 |
T |
|
| Q |
136 |
ataggaaggaatattttgagactttggctctaaaagaaggaggagttgttcgactcggaaataacaaaacttgcaaagtccaaggcatgggatccattcg |
235 |
Q |
| |
|
||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| | |||| |
|
|
| T |
21644898 |
ctagaaaggaatattttgagactttgactctaaaagaaggaggagttgttcgactcggaaataacaaagcttgcaaagtccaaggcatgggcaacgttcg |
21644799 |
T |
|
| Q |
236 |
tctaaagatgtttgatggtcgtgaattccttctcacggatgtgacgtttg |
285 |
Q |
| |
|
|||||||||||||||||| |||||||||||| | | |||||||| ||||| |
|
|
| T |
21644798 |
tctaaagatgtttgatggccgtgaattccttttaagggatgtgaggtttg |
21644749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 13 - 285
Target Start/End: Complemental strand, 21987905 - 21987632
Alignment:
| Q |
13 |
tccgttcaagttgtggtgacgtccaatgaagatggttatgagagtgcgggtgcattagtggttacaagttgggaactggagaagaggtgggttttggact |
112 |
Q |
| |
|
||||||||||||| || | |||| |||||||||||||||||||||||||||||| ||||||| ||||||||||||| |||||||| | ||||||||||| |
|
|
| T |
21987905 |
tccgttcaagttgcggaggcgtcaaatgaagatggttatgagagtgcgggtgcactagtggtcacaagttgggaaccagagaagagttaggttttggact |
21987806 |
T |
|
| Q |
113 |
cggggtgttttt-tcacatgtgtcataggaaggaatattttgagactttggctctaaaagaaggaggagttgttcgactcggaaataacaaaacttgcaa |
211 |
Q |
| |
|
| || || | || ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| |
|
|
| T |
21987805 |
caggatgctcttatcacatgtgtcctaggaaggaatattttgagactttggctctaaaagaaggaggagttgttcgactcggaaataacaaagcgtgcaa |
21987706 |
T |
|
| Q |
212 |
agtccaaggcatgggatccattcgtctaaagatgtttgatggtcgtgaattccttctcacggatgtgacgtttg |
285 |
Q |
| |
|
||||||||||||||| | |||||||||||||||||||||| |||||||||||| | | |||||||| ||||| |
|
|
| T |
21987705 |
agtccaaggcatgggcaacgttcgtctaaagatgtttgatggccgtgaattccttttaagggatgtgaggtttg |
21987632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 11 - 285
Target Start/End: Original strand, 9186245 - 9186520
Alignment:
| Q |
11 |
cttccgttcaagttgtggtgacgtccaatgaagatggttatgagagtgcgggtgcattagtggttacaagttgggaactggagaagaggtgggttttgga |
110 |
Q |
| |
|
|||||||||||||||||| | | || |||||||| |||||||||||| |||||||| ||||||||||||||||||||| ||||||||| ||||||||||| |
|
|
| T |
9186245 |
cttccgttcaagttgtggaggcttcaaatgaagaaggttatgagagtacgggtgcactagtggttacaagttgggaaccggagaagagttgggttttgga |
9186344 |
T |
|
| Q |
111 |
ctcggggtgttttt-tcacatgtgtcataggaaggaatattttgagactttggctctaaaagaaggaggagttgttcgactcggaaataacaaaacttgc |
209 |
Q |
| |
|
|||||| || | || ||||||||||| ||| ||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | ||| |
|
|
| T |
9186345 |
ctcgggatgctcttatcacatgtgtcctagaaagaaatattttgagactttggctctaaaagaaggaggagttgtttgactcggaaataacaaagcgtgc |
9186444 |
T |
|
| Q |
210 |
aaagtccaaggcatgggatccattcgtctaaagatgtttgatggtcgtgaattccttctcacggatgtgacgtttg |
285 |
Q |
| |
|
||||||||||||||||| | |||||||||||||||||||||| |||||||||||| | | |||||||| ||||| |
|
|
| T |
9186445 |
aaagtccaaggcatgggcatcgttcgtctaaagatgtttgatggccgtgaattccttttaaaggatgtgaagtttg |
9186520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 11 - 285
Target Start/End: Complemental strand, 49090676 - 49090400
Alignment:
| Q |
11 |
cttccgttcaagttgtggtgacgtccaatgaagatggttatgagagtgcgggtgcattagtggttacaagttgggaactggagaagaggtgggttttgga |
110 |
Q |
| |
|
||||||||||||||| || | ||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| ||||||||| || |||||||| |
|
|
| T |
49090676 |
cttccgttcaagttgcggaggcgtccaatgaagatggttatgagagtgcgggtgcactagtggtcacaagttgggaaccggagaagagttgagttttgga |
49090577 |
T |
|
| Q |
111 |
ctcggggtg-ttttttcacatgtgtcataggaaggaatattttgagactttggctctaaaagaaggaggagttgttcgactcggaaataacaaaa-cttg |
208 |
Q |
| |
|
|||||| || | | ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| | || |
|
|
| T |
49090576 |
ctcgggatgctctgatcacatgtgtcttaggaaggaatattttgagactttggctctaaaagaaggaggagttgctcgactcggaaataaaaaaagcgtg |
49090477 |
T |
|
| Q |
209 |
caaagtccaaggcatgggatccattcgtctaaagatgtttgatggtcgtgaattccttctcacggatgtgacgtttg |
285 |
Q |
| |
|
|||||||||||||||||| | |||||||||||||||||||||| ||||||||||| | | |||||||| ||||| |
|
|
| T |
49090476 |
caaagtccaaggcatgggcaacgttcgtctaaagatgtttgatggctgtgaattccttttaagggatgtgaggtttg |
49090400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 37 - 285
Target Start/End: Complemental strand, 18412619 - 18412370
Alignment:
| Q |
37 |
aatgaagatggttatgagagtgcgggtgcattagtggttacaagttgggaactggagaagaggtgggttttggactcggggtgttttt-tcacatgtgtc |
135 |
Q |
| |
|
|||||||| |||||||||||| |||||||| ||||||||||||||||| || ||||||||| ||||||||||||||||| || | || ||||||||||| |
|
|
| T |
18412619 |
aatgaagaaggttatgagagtacgggtgcactagtggttacaagttggaaatcggagaagagttgggttttggactcgggatgctcttatcacatgtgtc |
18412520 |
T |
|
| Q |
136 |
ataggaaggaatattttgagactttggctctaaaagaaggaggagttgttcgactcggaaataacaaaacttgcaaagtccaaggcatgggatccattcg |
235 |
Q |
| |
|
||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| | |||| |
|
|
| T |
18412519 |
ctagaaaggaatattttgagactttgactctaaaagaaggaggagttgttcgactcggaaataacaaagcttgcaaagtccaaggcatgggcaacgttcg |
18412420 |
T |
|
| Q |
236 |
tctaaagatgtttgatggtcgtgaattccttctcacggatgtgacgtttg |
285 |
Q |
| |
|
|||||||||||||||||| |||||||||||| | | |||||||| ||||| |
|
|
| T |
18412419 |
tctaaagatgtttgatggccgtgaattccttttaagggatgtgaggtttg |
18412370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 11 - 279
Target Start/End: Complemental strand, 16883914 - 16883645
Alignment:
| Q |
11 |
cttccgttcaagttgtggtgacgtccaatgaagatggttatgagagtgcgggtgcattagtggttacaagttgggaactggagaagaggtgggttttgga |
110 |
Q |
| |
|
|||| |||||||||| || | | || |||||||| |||||||||||||||||||| ||||||| ||||||||||||| ||||||||| ||||||||||| |
|
|
| T |
16883914 |
cttcggttcaagttgcggaggcttcgaatgaagaaggttatgagagtgcgggtgcgctagtggtaacaagttgggaaccggagaagagttgggttttgga |
16883815 |
T |
|
| Q |
111 |
ctcggggtgttttt-tcacatgtgtcataggaaggaatattttgagactttggctctaaaagaaggaggagttgttcgactcggaaataacaaaacttgc |
209 |
Q |
| |
|
|||||| || | || ||||||| | | ||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
16883814 |
ctcgggatgctcttatcacatgagccctagaaaggaatattttgagactttgattctaaaagaaggaggagttgttcgactcggaaataacaaagcttgc |
16883715 |
T |
|
| Q |
210 |
aaagtccaaggcatgggatccattcgtctaaagatgtttgatggtcgtgaattccttctcacggatgtga |
279 |
Q |
| |
|
||||||||||||||||| | |||||||||||||||||||||| |||||||||||| | | |||||||| |
|
|
| T |
16883714 |
aaagtccaaggcatgggcaacgttcgtctaaagatgtttgatggccgtgaattccttttaagggatgtga |
16883645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 11 - 279
Target Start/End: Original strand, 24262423 - 24262692
Alignment:
| Q |
11 |
cttccgttcaagttgtggtgacgtccaatgaagatggttatgagagtgcgggtgcattagtggttacaagttgggaactggagaagaggtgggttttgga |
110 |
Q |
| |
|
|||| |||||||||| || | | || |||||||| |||||||||||||||||||| ||||||| ||||||||||||| ||||||||| ||||||||||| |
|
|
| T |
24262423 |
cttcggttcaagttgcggaggcttcgaatgaagaaggttatgagagtgcgggtgcgctagtggtaacaagttgggaaccggagaagagttgggttttgga |
24262522 |
T |
|
| Q |
111 |
ctcggggtgttttt-tcacatgtgtcataggaaggaatattttgagactttggctctaaaagaaggaggagttgttcgactcggaaataacaaaacttgc |
209 |
Q |
| |
|
|||||| || | || ||||||| | | ||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
24262523 |
ctcgggatgctcttatcacatgagccctagaaaggaatattttgagactttgattctaaaagaaggaggagttgttcgactcggaaataacaaagcttgc |
24262622 |
T |
|
| Q |
210 |
aaagtccaaggcatgggatccattcgtctaaagatgtttgatggtcgtgaattccttctcacggatgtga |
279 |
Q |
| |
|
||||||||||||||||| | |||||||||||||||||||||| |||||||||||| | | |||||||| |
|
|
| T |
24262623 |
aaagtccaaggcatgggcaacgttcgtctaaagatgtttgatggccgtgaattccttttaagggatgtga |
24262692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 11 - 183
Target Start/End: Complemental strand, 12405324 - 12405151
Alignment:
| Q |
11 |
cttccgttcaagttgtggtgacgtccaatgaagatggttatgagagtgcgggtgcattagtggttacaagttgggaactggagaagaggtgggttttgga |
110 |
Q |
| |
|
|||| |||||||||| || | | || |||||||| ||||||||||||| ||||||| ||||||| ||||||||||||| ||||||||| || |||||||| |
|
|
| T |
12405324 |
cttcggttcaagttgcggaggcttcaaatgaagaaggttatgagagtgtgggtgcactagtggtaacaagttgggaaccggagaagagttgagttttgga |
12405225 |
T |
|
| Q |
111 |
ctcggggtg-ttttttcacatgtgtcataggaaggaatattttgagactttggctctaaaagaaggaggagttg |
183 |
Q |
| |
|
|||||| || | || ||||||||||| ||| ||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
12405224 |
ctcgggatgctcttatcacatgtgtcctagaaaggaatattttgagactttgattctaaaagaaggaggagttg |
12405151 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 165; Significance: 3e-88; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 11 - 262
Target Start/End: Original strand, 16625093 - 16625345
Alignment:
| Q |
11 |
cttccgttcaagttgtggtgacgtccaatgaagatggttatgagagtgcgggtgcattagtggttacaagttgggaactggagaagaggtgggttttgga |
110 |
Q |
| |
|
||||||||||||||| || | |||||||||||||||||| |||||||||||||||| ||||||||||||||||||||| ||||||||| ||||||||||| |
|
|
| T |
16625093 |
cttccgttcaagttgcggaggcgtccaatgaagatggttctgagagtgcgggtgcactagtggttacaagttgggaaccggagaagagttgggttttgga |
16625192 |
T |
|
| Q |
111 |
ctcggggtgttttt-tcacatgtgtcataggaaggaatattttgagactttggctctaaaagaaggaggagttgttcgactcggaaataacaaaacttgc |
209 |
Q |
| |
|
|||||| || | || ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | ||| |
|
|
| T |
16625193 |
ctcgggatgctcttatcacatgtgtcctaggaaggaatattttgagactttggctctaaaagaaggaggagttgttcgaatcggaaataacaaagcgtgc |
16625292 |
T |
|
| Q |
210 |
aaagtccaaggcatgggatccattcgtctaaagatgtttgatggtcgtgaatt |
262 |
Q |
| |
|
||||||||||||||||| | ||||||||||||||||||||| |||||||| |
|
|
| T |
16625293 |
aaagtccaaggcatgggcaacgttcgtctaaagatgtttgatgaccgtgaatt |
16625345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 16 - 285
Target Start/End: Original strand, 9225509 - 9225779
Alignment:
| Q |
16 |
gttcaagttgtggtgacgtccaatgaagatggttatgagagtgcgggtgcattagtggttacaagttgggaactggagaagaggtgggttttggactcgg |
115 |
Q |
| |
|
||||||||| || ||| || |||||||| ||||||||||||| ||||||| ||||||| ||||||||||||| ||||||||| |||||||||||||||| |
|
|
| T |
9225509 |
gttcaagttacggagacttcaaatgaagaaggttatgagagtgagggtgcactagtggtaacaagttgggaaccggagaagagctgggttttggactcgg |
9225608 |
T |
|
| Q |
116 |
ggtgttttt-tcacatgtgtcataggaaggaatattttgagactttggctctaaaagaaggaggagttgttcgactcggaaataacaaaacttgcaaagt |
214 |
Q |
| |
|
| || | || ||||||||||| ||| ||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||| |||||||||| |
|
|
| T |
9225609 |
gatgctcttatcacatgtgtcctagaaaggaatattttgagactttgattctaaaagaaggaggagttgtttgactcggaaataacaaagcttgcaaagt |
9225708 |
T |
|
| Q |
215 |
ccaaggcatgggatccattcgtctaaagatgtttgatggtcgtgaattccttctcacggatgtgacgtttg |
285 |
Q |
| |
|
|||||||||||| | |||||||||||||||||||||| |||||||||||| | | |||||||| ||||| |
|
|
| T |
9225709 |
ccaaggcatgggcaacgttcgtctaaagatgtttgatggccgtgaattccttttaagggatgtgaggtttg |
9225779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 13 - 279
Target Start/End: Complemental strand, 5146886 - 5146622
Alignment:
| Q |
13 |
tccgttcaagttgtggtgacgtccaatgaagatggttatgagagtgcgggtgcattagtggttacaagttgggaactggagaagaggtgggttttggact |
112 |
Q |
| |
|
||||||||||||| || | | || |||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| || ||||||||| |
|
|
| T |
5146886 |
tccgttcaagttgcggaggcatcaaatgaagatggttatgagagtgcgggtgcactagtggtcacaagttgggaactggagaagagtcggtttttggact |
5146787 |
T |
|
| Q |
113 |
cggggtg-ttttttcacatgtgtcataggaaggaatattttgagactttggctctaaaagaaggaggagttgttcgactcggaaataacaaaacttgcaa |
211 |
Q |
| |
|
| || || | || || |||||||| |||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
5146786 |
caggatgctcttatcgcatgtgtcctaggaaggaatattttga---tttggctctaaattaaggaggagttgttcgactcggaaataacaaagtgtgcaa |
5146690 |
T |
|
| Q |
212 |
agtccaaggcatgggatccattcgtctaaagatgtttgatggtcgtgaattccttctcacggatgtga |
279 |
Q |
| |
|
||||||||||| | | | ||||| |||||||||||||||| |||||| ||||| | | |||||||| |
|
|
| T |
5146689 |
agtccaaggcacgagcaacgttcgtataaagatgtttgatggccgtgaaatccttttaagggatgtga |
5146622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006 (Bit Score: 160; Significance: 3e-85; HSPs: 1)
Name: scaffold0006
Description:
Target: scaffold0006; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 11 - 285
Target Start/End: Complemental strand, 1494 - 1219
Alignment:
| Q |
11 |
cttccgttcaagttgtggtgacgtccaatgaagatggttatgagagtgcgggtgcattagtggttacaagttgggaactggagaagaggtgggttttgga |
110 |
Q |
| |
|
|||||||||||||||| ||| ||||| ||||||||||||||||||||||||||||| ||||||| ||||||||||||| ||||||||| ||||||||||| |
|
|
| T |
1494 |
cttccgttcaagttgttgtggcgtccgatgaagatggttatgagagtgcgggtgcactagtggtcacaagttgggaaccggagaagagttgggttttgga |
1395 |
T |
|
| Q |
111 |
ctcggggtgttttt-tcacatgtgtcataggaaggaatattttgagactttggctctaaaagaaggaggagttgttcgactcggaaataacaaaacttgc |
209 |
Q |
| |
|
|||||| || | || ||||||||||| ||| || |||||||||||||||||||||||||||||||||||||| | |||||||||||||||||| | ||| |
|
|
| T |
1394 |
ctcgggatgctcttatcacatgtgtcttagaaatgaatattttgagactttggctctaaaagaaggaggagtagctcgactcggaaataacaaggcgtgc |
1295 |
T |
|
| Q |
210 |
aaagtccaaggcatgggatccattcgtctaaagatgtttgatggtcgtgaattccttctcacggatgtgacgtttg |
285 |
Q |
| |
|
||||||||||||||||| | |||||||||||||||||||||||| |||||||||| | | |||||||| ||||| |
|
|
| T |
1294 |
aaagtccaaggcatgggcaacgttcgtctaaagatgtttgatggtcttgaattccttttaagggatgtgaggtttg |
1219 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 158; Significance: 4e-84; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 37 - 285
Target Start/End: Original strand, 18856401 - 18856650
Alignment:
| Q |
37 |
aatgaagatggttatgagagtgcgggtgcattagtggttacaagttgggaactggagaagaggtgggttttggactcggggtgttttt-tcacatgtgtc |
135 |
Q |
| |
|
|||||||| ||||||||||||||||||||| ||||||||||||||||||||| ||||||||| ||||||||||||||||| || | || ||||||||||| |
|
|
| T |
18856401 |
aatgaagaaggttatgagagtgcgggtgcactagtggttacaagttgggaaccggagaagagctgggttttggactcgggatgctcttatcacatgtgtc |
18856500 |
T |
|
| Q |
136 |
ataggaaggaatattttgagactttggctctaaaagaaggaggagttgttcgactcggaaataacaaaacttgcaaagtccaaggcatgggatccattcg |
235 |
Q |
| |
|
||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| | |||| |
|
|
| T |
18856501 |
ctagaaaggaatattttgagactttgattctaaaagaaggaggagttgttcgactcggaaataacaaagcttgcaaagtccaaggcatgggcaacgttcg |
18856600 |
T |
|
| Q |
236 |
tctaaagatgtttgatggtcgtgaattccttctcacggatgtgacgtttg |
285 |
Q |
| |
|
|||||||||||||||||| |||||||||||| | | |||||||| ||||| |
|
|
| T |
18856601 |
tctaaagatgtttgatggccgtgaattccttttaagggatgtgaggtttg |
18856650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 39 - 285
Target Start/End: Complemental strand, 26300309 - 26300062
Alignment:
| Q |
39 |
tgaagatggttatgagagtgcgggtgcattagtggttacaagttgggaactggagaagaggtgggttttggactcggggtgttttt-tcacatgtgtcat |
137 |
Q |
| |
|
|||||| ||||||||||||||||||||| ||||||||||||||||||||| ||||||||| ||||||||||||| ||| || | || ||||||||||||| |
|
|
| T |
26300309 |
tgaagaaggttatgagagtgcgggtgcactagtggttacaagttgggaaccggagaagagttgggttttggacttgggatgctcttatcacatgtgtcat |
26300210 |
T |
|
| Q |
138 |
aggaaggaatattttgagactttggctctaaaagaaggaggagttgttcgactcggaaataacaaaacttgcaaagtccaaggcatgggatccattcgtc |
237 |
Q |
| |
|
|| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| | ||||| |
|
|
| T |
26300209 |
agaaaggaatattttgagactttgactctaaaagaaggaggagttgttcgactcggaaataacaaagcttgcaaagtccaaggcatgggcaacgttcgtg |
26300110 |
T |
|
| Q |
238 |
taaagatgtttgatggtcgtgaattccttctcacggatgtgacgtttg |
285 |
Q |
| |
|
|||||||||||||||| |||||||||||| | | |||||||| ||||| |
|
|
| T |
26300109 |
taaagatgtttgatggccgtgaattccttttaagggatgtgaggtttg |
26300062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 37 - 285
Target Start/End: Original strand, 18866796 - 18867045
Alignment:
| Q |
37 |
aatgaagatggttatgagagtgcgggtgcattagtggttacaagttgggaactggagaagaggtgggttttggactcggggtgttttt-tcacatgtgtc |
135 |
Q |
| |
|
|||||||| |||||||||||||| |||||| ||||||||||||||||||||| ||||||||| ||||||||||||||||| || | || ||||||||||| |
|
|
| T |
18866796 |
aatgaagaaggttatgagagtgcaggtgcactagtggttacaagttgggaaccggagaagagctgggttttggactcgggatgctcttatcacatgtgtc |
18866895 |
T |
|
| Q |
136 |
ataggaaggaatattttgagactttggctctaaaagaaggaggagttgttcgactcggaaataacaaaacttgcaaagtccaaggcatgggatccattcg |
235 |
Q |
| |
|
||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| | |||| |
|
|
| T |
18866896 |
ctagaaaggaatattttgagactttgattctaaaagaaggaggagttgttcgactcggaaataacaaagcttgcaaagtccaaggcatgggcaacgttcg |
18866995 |
T |
|
| Q |
236 |
tctaaagatgtttgatggtcgtgaattccttctcacggatgtgacgtttg |
285 |
Q |
| |
|
|||||||||||||||||| |||||||||||| | | |||||||| ||||| |
|
|
| T |
18866996 |
tctaaagatgtttgatggccgtgaattccttttaagggatgtgaggtttg |
18867045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 11 - 279
Target Start/End: Original strand, 10685364 - 10685633
Alignment:
| Q |
11 |
cttccgttcaagttgtggtgacgtccaatgaagatggttatgagagtgcgggtgcattagtggttacaagttgggaactggagaagaggtgggttttgga |
110 |
Q |
| |
|
|||| |||||||||| || | | || |||||||| |||||||||||||||||||| ||||||| ||||||||||||| ||||||||| ||||||||||| |
|
|
| T |
10685364 |
cttcggttcaagttgcggaggcttcgaatgaagaaggttatgagagtgcgggtgcgctagtggtaacaagttgggaaccggagaagagttgggttttgga |
10685463 |
T |
|
| Q |
111 |
ctcggggtgttttt-tcacatgtgtcataggaaggaatattttgagactttggctctaaaagaaggaggagttgttcgactcggaaataacaaaacttgc |
209 |
Q |
| |
|
|||||| || | || ||||||| | | ||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
10685464 |
ctcgggatgctcttatcacatgagccctagaaaggaatattttgagactttgattctaaaagaaggaggagttgttcgactcggaaataacaaagcttgc |
10685563 |
T |
|
| Q |
210 |
aaagtccaaggcatgggatccattcgtctaaagatgtttgatggtcgtgaattccttctcacggatgtga |
279 |
Q |
| |
|
||||||||||||||||| | |||||||||||||||||||||| |||||||||||| | | |||||||| |
|
|
| T |
10685564 |
aaagtccaaggcatgggcaacgttcgtctaaagatgtttgatggccgtgaattccttttaagggatgtga |
10685633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 11 - 285
Target Start/End: Complemental strand, 35744377 - 35744101
Alignment:
| Q |
11 |
cttccgttcaagttgtggtgacgtccaatgaagatggttatgagagtgcgggtgcattagtggttacaagttgggaactggagaagaggtgggttttgga |
110 |
Q |
| |
|
|||| |||||||||| || | | || |||||||| |||||||||||||||||||| ||||||| ||||||||||||| ||||||||| ||||||||||| |
|
|
| T |
35744377 |
cttcggttcaagttgcggaggcttcaaatgaagaaggttatgagagtgcgggtgcgctagtggtaacaagttgggaaccggagaagagttgggttttgga |
35744278 |
T |
|
| Q |
111 |
ctcggggtgttttt-tcacatgtgtcataggaaggaatattttgagactttggctctaaaagaagga-ggagttgttcgactcggaaataacaaaacttg |
208 |
Q |
| |
|
|||||| || | | ||||||||||| ||| ||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||| |||| |
|
|
| T |
35744277 |
ctcgggatgctcatatcacatgtgtcctagaaaggaatattttgagactttgattctaaaagaaggaaggagttgttcgactcggaaataacaaagcttg |
35744178 |
T |
|
| Q |
209 |
caaagtccaaggcatgggatccattcgtctaaagatgtttgatggtcgtgaattccttctcacggatgtgacgtttg |
285 |
Q |
| |
|
|||||||||||||||||| | |||||||||||||||||||||| |||||||||||| | | |||||||| ||||| |
|
|
| T |
35744177 |
caaagtccaaggcatgggcaacgttcgtctaaagatgtttgatggccgtgaattccttttaagggatgtgaggtttg |
35744101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 11 - 220
Target Start/End: Original strand, 23800618 - 23800828
Alignment:
| Q |
11 |
cttccgttcaagttgtggtgacgtccaatgaagatggttatgagagtgcgggtgcattagtggttacaagttgggaactggagaagaggtgggttttgga |
110 |
Q |
| |
|
||||||||||||||| ||| |||| || || ||||||||||||||||||||||| ||||||| ||||||||||||| ||||||||| ||||||||| | |
|
|
| T |
23800618 |
cttccgttcaagttgcagtggtgtccgattaacatggttatgagagtgcgggtgcactagtggtcacaagttgggaaccggagaagagttgggttttgaa |
23800717 |
T |
|
| Q |
111 |
ctcggggtgttttt-tcacatgtgtcataggaaggaatattttgagactttggctctaaaagaaggaggagttgttcgactcggaaataacaaaacttgc |
209 |
Q |
| |
|
|||||| || | || ||||||||||| |||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||| | ||| |
|
|
| T |
23800718 |
ctcgggatgctcttatcacatgtgtcttaggaaggaatattttgagactttggttctaaaagaaggaagagttgttcgactcggaaataacaaagcgtgc |
23800817 |
T |
|
| Q |
210 |
aaagtccaagg |
220 |
Q |
| |
|
||||||||||| |
|
|
| T |
23800818 |
aaagtccaagg |
23800828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0197 (Bit Score: 156; Significance: 7e-83; HSPs: 1)
Name: scaffold0197
Description:
Target: scaffold0197; HSP #1
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 11 - 285
Target Start/End: Original strand, 15409 - 15684
Alignment:
| Q |
11 |
cttccgttcaagttgtggtgacgtccaatgaagatggttatgagagtgcgggtgcattagtggttacaagttgggaactggagaagaggtgggttttgga |
110 |
Q |
| |
|
|||| |||||||||| || | | || |||||||| ||||||||||||||||||||| ||||||| ||||||||||||| ||||||||| ||||||||||| |
|
|
| T |
15409 |
cttcggttcaagttgcggaggcttcaaatgaagaaggttatgagagtgcgggtgcactagtggtaacaagttgggaaccggagaagagttgggttttgga |
15508 |
T |
|
| Q |
111 |
ctcggggtgttttt-tcacatgtgtcataggaaggaatattttgagactttggctctaaaagaaggaggagttgttcgactcggaaataacaaaacttgc |
209 |
Q |
| |
|
|||||| || | || ||||||||||| ||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
15509 |
ctcgggatgctcttatcacatgtgtcctagaaaggaatattttgagactttgattctaaaagaaggaggagttgttcgactcggaaataacaaagcttgc |
15608 |
T |
|
| Q |
210 |
aaagtccaaggcatgggatccattcgtctaaagatgtttgatggtcgtgaattccttctcacggatgtgacgtttg |
285 |
Q |
| |
|
||||||||||||||||| | |||||||||||||||||||||| |||||||||||| | | |||||||| ||||| |
|
|
| T |
15609 |
aaagtccaaggcatgggcaacgttcgtctaaagatgtttgatggccgtgaattccttttaagggatgtgaggtttg |
15684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 156; Significance: 7e-83; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 11 - 285
Target Start/End: Original strand, 14738672 - 14738947
Alignment:
| Q |
11 |
cttccgttcaagttgtggtgacgtccaatgaagatggttatgagagtgcgggtgcattagtggttacaagttgggaactggagaagaggtgggttttgga |
110 |
Q |
| |
|
|||| |||||||||| || | | || |||||||| ||||||||||||||||||||| ||||||| ||||||||||||| ||||||||| ||||||||||| |
|
|
| T |
14738672 |
cttcggttcaagttgcggaggcttcaaatgaagaaggttatgagagtgcgggtgcactagtggtaacaagttgggaaccggagaagagctgggttttgga |
14738771 |
T |
|
| Q |
111 |
ctcggggtgttttt-tcacatgtgtcataggaaggaatattttgagactttggctctaaaagaaggaggagttgttcgactcggaaataacaaaacttgc |
209 |
Q |
| |
|
|||||| || | || ||||||||||| ||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
14738772 |
ctcgggatgctcttatcacatgtgtcctagaaaggaatattttgagactttgattctaaaagaaggaggagttgttcgactcggaaataacaaagcttgc |
14738871 |
T |
|
| Q |
210 |
aaagtccaaggcatgggatccattcgtctaaagatgtttgatggtcgtgaattccttctcacggatgtgacgtttg |
285 |
Q |
| |
|
||||||||||||||||| | |||||||||||||||||||||| |||||||||||| | | |||||||| ||||| |
|
|
| T |
14738872 |
aaagtccaaggcatgggcaacgttcgtctaaagatgtttgatggccgtgaattccttttaagggatgtgaggtttg |
14738947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 16 - 285
Target Start/End: Original strand, 33332181 - 33332451
Alignment:
| Q |
16 |
gttcaagttgtggtgacgtccaatgaagatggttatgagagtgcgggtgcattagtggttacaagttgggaactggagaagaggtgggttttggactcgg |
115 |
Q |
| |
|
|||||||||| || | | || |||||||| |||||||||||||||||||| ||||||| ||||||||||||| ||||||||| |||||||||||||||| |
|
|
| T |
33332181 |
gttcaagttgcggaggcttcaaatgaagaaggttatgagagtgcgggtgcgctagtggtaacaagttgggaaccggagaagagttgggttttggactcgg |
33332280 |
T |
|
| Q |
116 |
ggtgttttt-tcacatgtgtcataggaaggaatattttgagactttggctctaaaagaaggaggagttgttcgactcggaaataacaaaacttgcaaagt |
214 |
Q |
| |
|
| || | || ||||||||||| ||| ||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||| |||||||||| |
|
|
| T |
33332281 |
gatgctcttatcacatgtgtcctagaaaggaatattttgagactttgattctaaaagaaggaggagttgttcgactcagaaataacaaagcttgcaaagt |
33332380 |
T |
|
| Q |
215 |
ccaaggcatgggatccattcgtctaaagatgtttgatggtcgtgaattccttctcacggatgtgacgtttg |
285 |
Q |
| |
|
|||||||| ||| | |||||||||||||||||||||| |||||||||||| | | |||||||| ||||| |
|
|
| T |
33332381 |
ccaaggcacgggcaacgttcgtctaaagatgtttgatggccgtgaattccttttaagggatgtgaggtttg |
33332451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 11 - 285
Target Start/End: Original strand, 24432421 - 24432696
Alignment:
| Q |
11 |
cttccgttcaagttgtggtgacgtccaatgaagatggttatgagagtgcgggtgcattagtggttacaagttgggaactggagaagaggtgggttttgga |
110 |
Q |
| |
|
||||||||||||||| |||| | || ||||||||| ||||||||||| ||||||| ||| ||| | ||||||||||| |||||||| ||||||||||| |
|
|
| T |
24432421 |
cttccgttcaagttgcggtggcatctgatgaagatgtttatgagagtgtgggtgcactagcggtcataagttgggaaccagagaagagttgggttttgga |
24432520 |
T |
|
| Q |
111 |
ctcggggtgttttt-tcacatgtgtcataggaaggaatattttgagactttggctctaaaagaaggaggagttgttcgactcggaaataacaaaacttgc |
209 |
Q |
| |
|
|||||| || | || |||| | |||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | ||| |
|
|
| T |
24432521 |
ctcgggatgctcttatcacgtatgtcatagaaaggaatattttgagactttggctctaaaagaatgaggagttgttcgactcggaaataacaaagcgtgc |
24432620 |
T |
|
| Q |
210 |
aaagtccaaggcatgggatccattcgtctaaagatgtttgatggtcgtgaattccttctcacggatgtgacgtttg |
285 |
Q |
| |
|
| |||||||||| |||| || |||||||||||||||||||||| |||||||||||| | | |||||||| ||||| |
|
|
| T |
24432621 |
acagtccaaggcgtgggcaccgttcgtctaaagatgtttgatggccgtgaattccttttaagggatgtgaggtttg |
24432696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 13 - 285
Target Start/End: Complemental strand, 29485559 - 29485299
Alignment:
| Q |
13 |
tccgttcaagttgtggtgacgtccaatgaagatggttatgagagtgcgggtgcattagtggttacaagttgggaactggagaagaggtgggttttggact |
112 |
Q |
| |
|
||||||||||||| || | ||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| ||||||||| ||||||||||||| |
|
|
| T |
29485559 |
tccgttcaagttgcggaggtgtccaatgaagattgttatgagagtgcgggtgcactagtggttacaagttgggaaccggagaagagttgggttttggact |
29485460 |
T |
|
| Q |
113 |
cggggtg-ttttttcacatgtgtcataggaaggaatattttgagactttggctctaaaagaaggaggagttgttcgactcggaaataacaaaacttgcaa |
211 |
Q |
| |
|
|||| || | || ||||||||||| ||||||||||||||||| |||||||| ||||||||||||||| |||||||| ||| | ||||| |
|
|
| T |
29485459 |
cgggatgctcttatcacatgtgtcctaggaaggaatattttgggactttggttctaaaagaaggagg-------------ggaaataataaagcgtgcaa |
29485373 |
T |
|
| Q |
212 |
agtccaaggcatgggatccattcgtctaaagatgtttgatggtcgtgaattccttctcacggatgtgacgtttg |
285 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||| |||||||||||| | | |||||||| ||||| |
|
|
| T |
29485372 |
agtccaaggcatgggcaacattcgtctaaagatgtttgatggccgtgaattccttttaagggatgtgaggtttg |
29485299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 3 - 224
Target Start/End: Complemental strand, 24077925 - 24077703
Alignment:
| Q |
3 |
tggtggttcttccgttcaagttgtggtgacgtccaatgaagatggttatgagagtgcgggtgcattagtggttacaagttgggaactggagaagaggtgg |
102 |
Q |
| |
|
|||| ||||||| ||| |||||| || ||||| ||||||||||||||||||||||||||||||||| | | |||||||||||| |||||||| ||| |
|
|
| T |
24077925 |
tggtagttcttctgtttaagttgcaatggcgtccgatgaagatggttatgagagtgcgggtgcattagcgatcacaagttgggaatcagagaagagttgg |
24077826 |
T |
|
| Q |
103 |
gttttggactcggggtgttttt-tcacatgtgtcataggaaggaatattttgagactttggctctaaaagaaggaggagttgttcgactcggaaataaca |
201 |
Q |
| |
|
|| |||||||| ||||| | || |||||||| | | |||||||||||||||||||||| |||||||||||| ||||||||||||||| |||||||| |
|
|
| T |
24077825 |
gtcttggactcagggtgctcttatcacatgtttttgggaaaggaatattttgagactttggatctaaaagaaggtggagttgttcgactcaaaaataaca |
24077726 |
T |
|
| Q |
202 |
aaacttgcaaagtccaaggcatg |
224 |
Q |
| |
|
| |||||||||||||| ||||| |
|
|
| T |
24077725 |
aggcttgcaaagtccaacgcatg |
24077703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 156; Significance: 7e-83; HSPs: 10)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 11 - 285
Target Start/End: Complemental strand, 27448809 - 27448534
Alignment:
| Q |
11 |
cttccgttcaagttgtggtgacgtccaatgaagatggttatgagagtgcgggtgcattagtggttacaagttgggaactggagaagaggtgggttttgga |
110 |
Q |
| |
|
|||| ||||||||||||| | | || |||||||| ||||||||||||||||||||| ||||||| ||||||||||||| ||||||||| ||||||||||| |
|
|
| T |
27448809 |
cttcggttcaagttgtggaggcttcaaatgaagaaggttatgagagtgcgggtgcactagtggtaacaagttgggaaccggagaagagctgggttttgga |
27448710 |
T |
|
| Q |
111 |
ctcggggtgttttt-tcacatgtgtcataggaaggaatattttgagactttggctctaaaagaaggaggagttgttcgactcggaaataacaaaacttgc |
209 |
Q |
| |
|
|||||| || | || ||||||||||| ||| || |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
27448709 |
ctcgggatgctcttatcacatgtgtcctagaaatgaatattttgagactttgattctaaaagaaggaggagttgttcgactcggaaataacaaagcttgc |
27448610 |
T |
|
| Q |
210 |
aaagtccaaggcatgggatccattcgtctaaagatgtttgatggtcgtgaattccttctcacggatgtgacgtttg |
285 |
Q |
| |
|
||||||||||||||||| | |||||||||||||||||||||| |||||||||||| | | |||||||| ||||| |
|
|
| T |
27448609 |
aaagtccaaggcatgggcaacgttcgtctaaagatgtttgatggccgtgaattccttttaagggatgtgaggtttg |
27448534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 11 - 266
Target Start/End: Complemental strand, 43596108 - 43595852
Alignment:
| Q |
11 |
cttccgttcaagttgtggtgacgtccaatgaagatggttatgagagtgcgggtgcattagtggttacaagttgggaactggagaagaggtgggttttgga |
110 |
Q |
| |
|
|||| ||||||||||||| | | || |||||||| ||||||||||||||||||||| ||||||| ||||||||||||| ||||||||| ||||||||||| |
|
|
| T |
43596108 |
cttcggttcaagttgtggaggcttcaaatgaagaaggttatgagagtgcgggtgcactagtggtaacaagttgggaaccggagaagagctgggttttgga |
43596009 |
T |
|
| Q |
111 |
ctcggggtgttttt-tcacatgtgtcataggaaggaatattttgagactttggctctaaaagaaggaggagttgttcgactcggaaataacaaaacttgc |
209 |
Q |
| |
|
|||||| || | || ||||||||||| ||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
43596008 |
ctcgggatgctcttatcacatgtgtcctagaaaggaatattttgagactttgattctaaaagaaggaggagttgttcgactcggaaataacaaagcttgc |
43595909 |
T |
|
| Q |
210 |
aaagtccaaggcatgggatccattcgtctaaagatgtttgatggtcgtgaattcctt |
266 |
Q |
| |
|
||||||||||||||||| | |||||||||| ||||||||||| |||||||||||| |
|
|
| T |
43595908 |
aaagtccaaggcatgggcaacgttcgtctaaatatgtttgatggccgtgaattcctt |
43595852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 11 - 266
Target Start/End: Complemental strand, 43628902 - 43628646
Alignment:
| Q |
11 |
cttccgttcaagttgtggtgacgtccaatgaagatggttatgagagtgcgggtgcattagtggttacaagttgggaactggagaagaggtgggttttgga |
110 |
Q |
| |
|
|||| ||||||||||||| | | || |||||||| ||||||||||||||||||||| ||||||| ||||||||||||| ||||||||| ||||||||||| |
|
|
| T |
43628902 |
cttcggttcaagttgtggaggcttcaaatgaagaaggttatgagagtgcgggtgcactagtggtaacaagttgggaaccggagaagagctgggttttgga |
43628803 |
T |
|
| Q |
111 |
ctcggggtgttttt-tcacatgtgtcataggaaggaatattttgagactttggctctaaaagaaggaggagttgttcgactcggaaataacaaaacttgc |
209 |
Q |
| |
|
|||||| || | || ||||||||||| ||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
43628802 |
ctcgggatgctcttatcacatgtgtcctagaaaggaatattttgagactttgattctaaaagaaggaggagttgttcgactcggaaataacaaagcttgc |
43628703 |
T |
|
| Q |
210 |
aaagtccaaggcatgggatccattcgtctaaagatgtttgatggtcgtgaattcctt |
266 |
Q |
| |
|
||||||||||||||||| | |||||||||| ||||||||||| |||||||||||| |
|
|
| T |
43628702 |
aaagtccaaggcatgggcaacgttcgtctaaatatgtttgatggccgtgaattcctt |
43628646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 11 - 285
Target Start/End: Original strand, 24556685 - 24556959
Alignment:
| Q |
11 |
cttccgttcaagttgtggtgacgtccaatgaagatggttatgagagtgcgggtgcattagtggttacaagttgggaactggagaagaggtgggttttgga |
110 |
Q |
| |
|
||||||||||||||| |||| ||||| |||||||||||||||||| || ||||||| ||||||| ||||||||||||| |||||||| ||||||||||| |
|
|
| T |
24556685 |
cttccgttcaagttgcggtggcgtccgatgaagatggttatgaga-tgtgggtgcactagtggtcacaagttgggaaccagagaagagttgggttttgga |
24556783 |
T |
|
| Q |
111 |
ctcggggtgttttt-tcacatgtgtcataggaaggaatattttgagactttggctctaaaagaaggaggagttgttcgactcggaaataacaaaacttgc |
209 |
Q |
| |
|
|| ||| || | || |||||||| || || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| |
|
|
| T |
24556784 |
cttgggatgatcttatcacatgtatcctacaaaggaatattttgagactttggctctaaaagaaggaggagttgttcgactcggaaataacaaagcgtgc |
24556883 |
T |
|
| Q |
210 |
aaagtccaaggcatgggatccattcgtctaaagatgtttgatggtcgtgaattccttctcacggatgtgacgtttg |
285 |
Q |
| |
|
||||||||||||||||| || |||||||||||||||||||| | |||||||||||| | | |||||||| ||||| |
|
|
| T |
24556884 |
aaagtccaaggcatgggcaccgttcgtctaaagatgtttgatagccgtgaattccttttaaaggatgtgaggtttg |
24556959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 11 - 285
Target Start/End: Original strand, 24597717 - 24597991
Alignment:
| Q |
11 |
cttccgttcaagttgtggtgacgtccaatgaagatggttatgagagtgcgggtgcattagtggttacaagttgggaactggagaagaggtgggttttgga |
110 |
Q |
| |
|
||||||||||||||| |||| ||||| |||||||||||||||||| || ||||||| ||||||| ||||||||||||| |||||||| ||||||||||| |
|
|
| T |
24597717 |
cttccgttcaagttgcggtggcgtccgatgaagatggttatgaga-tgtgggtgcactagtggtcacaagttgggaaccagagaagagttgggttttgga |
24597815 |
T |
|
| Q |
111 |
ctcggggtgttttt-tcacatgtgtcataggaaggaatattttgagactttggctctaaaagaaggaggagttgttcgactcggaaataacaaaacttgc |
209 |
Q |
| |
|
|| ||| || | || |||||||| || || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| |
|
|
| T |
24597816 |
cttgggatgatcttatcacatgtatcctacaaaggaatattttgagactttggctctaaaagaaggaggagttgttcgactcggaaataacaaagcgtgc |
24597915 |
T |
|
| Q |
210 |
aaagtccaaggcatgggatccattcgtctaaagatgtttgatggtcgtgaattccttctcacggatgtgacgtttg |
285 |
Q |
| |
|
||||||||||||||||| || |||||||||||||||||||| | |||||||||||| | | |||||||| ||||| |
|
|
| T |
24597916 |
aaagtccaaggcatgggcaccgttcgtctaaagatgtttgatagccgtgaattccttttaaaggatgtgaggtttg |
24597991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 11 - 285
Target Start/End: Complemental strand, 33790302 - 33790027
Alignment:
| Q |
11 |
cttccgttcaagttgtggtgacgtccaatgaagatggttatgagagtgcgggtgcattagtggttacaagttgggaactggagaagaggtgggttttgga |
110 |
Q |
| |
|
|||| |||||||||| || | | || |||||||| |||||||||||||||||||| ||||||| ||||||||||||| ||||||||| ||||||||||| |
|
|
| T |
33790302 |
cttcggttcaagttgcggaggcttcaaatgaagaaggttatgagagtgcgggtgcgctagtggtaacaagttgggaaccggagaagagttgggttttgga |
33790203 |
T |
|
| Q |
111 |
ctcggggtgttttt-tcacatgtgtcataggaaggaatattttgagactttggctctaaaagaaggaggagttgttcgactcggaaataacaaaacttgc |
209 |
Q |
| |
|
|||||| || | || ||||||||||| ||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
33790202 |
ctcgggatgctcttatcacatgtgtcctagaaaggaatattttgagactttgattctaaaagaaggaggagttgttcgactcggaaataacaaagcttgc |
33790103 |
T |
|
| Q |
210 |
aaagtccaaggcatgggatccattcgtctaaagatgtttgatggtcgtgaattccttctcacggatgtgacgtttg |
285 |
Q |
| |
|
||||||||||||||||| | ||| |||||||||||||||||| |||||||||||| | | |||||||| ||||| |
|
|
| T |
33790102 |
aaagtccaaggcatgggcaacgttcatctaaagatgtttgatggccgtgaattccttttaagggatgtgaggtttg |
33790027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 11 - 279
Target Start/End: Original strand, 31398092 - 31398361
Alignment:
| Q |
11 |
cttccgttcaagttgtggtgacgtccaatgaagatggttatgagagtgcgggtgcattagtggttacaagttgggaactggagaagaggtgggttttgga |
110 |
Q |
| |
|
|||| |||||||||| || | | || |||||||| |||||||||||||||||||| ||||||| ||||||||||||| ||||||||| ||||||||||| |
|
|
| T |
31398092 |
cttcagttcaagttgcggaggcttcgaatgaagaaggttatgagagtgcgggtgcgctagtggtaacaagttgggaaccggagaagagttgggttttgga |
31398191 |
T |
|
| Q |
111 |
ctcggggtgttttt-tcacatgtgtcataggaaggaatattttgagactttggctctaaaagaaggaggagttgttcgactcggaaataacaaaacttgc |
209 |
Q |
| |
|
|||||| || | || ||||||| | | ||| |||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
31398192 |
ctcgggatgctcttatcacatgagccctagaaaggaacattttgagactttgattctaaaagaaggaggagttgttcgactcggaaataacaaagcttgc |
31398291 |
T |
|
| Q |
210 |
aaagtccaaggcatgggatccattcgtctaaagatgtttgatggtcgtgaattccttctcacggatgtga |
279 |
Q |
| |
|
||||||||||||||||| | |||||||||||||||||||||| |||||||||||| | | |||||||| |
|
|
| T |
31398292 |
aaagtccaaggcatgggcaacgttcgtctaaagatgtttgatggccgtgaattccttttaagggatgtga |
31398361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 16 - 285
Target Start/End: Original strand, 37557729 - 37557999
Alignment:
| Q |
16 |
gttcaagttgtggtgacgtccaatgaagatggttatgagagtgcgggtgcattagtggttacaagttgggaactggagaagaggtgggttttggactcgg |
115 |
Q |
| |
|
|||||||||| || | | || |||||||| ||||||||||||||||||||| ||||||| ||||||||||||| |||||||| |||||||||||||||| |
|
|
| T |
37557729 |
gttcaagttgcggaggcttcaaatgaagaaggttatgagagtgcgggtgcactagtggtaacaagttgggaaccagagaagagttgggttttggactcgg |
37557828 |
T |
|
| Q |
116 |
ggtgttttt-tcacatgtgtcataggaaggaatattttgagactttggctctaaaagaaggaggagttgttcgactcggaaataacaaaacttgcaaagt |
214 |
Q |
| |
|
| || | || ||||||| || ||| | ||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||| |||||||||| |
|
|
| T |
37557829 |
gatgctcttatcacatgattcctagaatggaatattttgagactttgattctaaaagaaggaggaattgttcgactcggaaataacaaagcttgcaaagt |
37557928 |
T |
|
| Q |
215 |
ccaaggcatgggatccattcgtctaaagatgtttgatggtcgtgaattccttctcacggatgtgacgtttg |
285 |
Q |
| |
|
|||||||||||| | |||||||||||||||||||||| |||||||||||| | | |||||||| ||||| |
|
|
| T |
37557929 |
ccaaggcatgggcaacgttcgtctaaagatgtttgatggccgtgaattccttttaagggatgtgaggtttg |
37557999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 144 - 279
Target Start/End: Complemental strand, 28837145 - 28837010
Alignment:
| Q |
144 |
gaatattttgagactttggctctaaaagaaggaggagttgttcgactcggaaataacaaaacttgcaaagtccaaggcatgggatccattcgtctaaaga |
243 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||| | |||||||||||||||||||| || || ||||||||| |
|
|
| T |
28837145 |
gaatattttgagactttggctttaaaagaaggaggagttgttcgacttggaaataacaaagcatgcaaagtccaaggcatgggcaccgtttgtctaaaga |
28837046 |
T |
|
| Q |
244 |
tgtttgatggtcgtgaattccttctcacggatgtga |
279 |
Q |
| |
|
|||||||||| |||||||||||| | | |||||||| |
|
|
| T |
28837045 |
tgtttgatggccgtgaattccttttaaaggatgtga |
28837010 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 3 - 211
Target Start/End: Complemental strand, 34841611 - 34841402
Alignment:
| Q |
3 |
tggtggttcttccgttcaagttgtggtgacgtccaatgaagatggttatgagagtgcgggtgcattagtggttacaagttgggaactggagaagaggtgg |
102 |
Q |
| |
|
|||| ||||||| |||||||||| ||||| ||| ||||||||||||| |||||||| |||||| ||| ||| |||| |||| ||| | || || | | |
|
|
| T |
34841611 |
tggtagttcttcggttcaagttgcagtgacttccgatgaagatggttaggagagtgcaggtgcactagcggtcacaaattggaaaccaaaaaatagttag |
34841512 |
T |
|
| Q |
103 |
gttttggactcggggtgttttt-tcacatgtgtcataggaaggaatattttgagactttggctctaaaagaaggaggagttgttcgactcggaaataaca |
201 |
Q |
| |
|
|| ||||||| ||| || | | |||||||||| ||| ||| | |||||||||||||||| ||||||||| |||||||||||||||| ||| |||| |
|
|
| T |
34841511 |
gtcttggacttgggttgctctgatcacatgtgttctagaaagaagtattttgagactttggagttaaaagaagacggagttgttcgactcgaaaacaaca |
34841412 |
T |
|
| Q |
202 |
aaacttgcaa |
211 |
Q |
| |
|
|| ||||||| |
|
|
| T |
34841411 |
aagcttgcaa |
34841402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 156; Significance: 7e-83; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 11 - 285
Target Start/End: Complemental strand, 16263349 - 16263074
Alignment:
| Q |
11 |
cttccgttcaagttgtggtgacgtccaatgaagatggttatgagagtgcgggtgcattagtggttacaagttgggaactggagaagaggtgggttttgga |
110 |
Q |
| |
|
||||||||||||||| || | | || ||||||||||||| |||||||||||||||| |||||||||||||||||||| ||||||||| ||||||||||| |
|
|
| T |
16263349 |
cttccgttcaagttgcggaggcttcaaatgaagatggttttgagagtgcgggtgcactagtggttacaagttgggaatcggagaagagttgggttttgga |
16263250 |
T |
|
| Q |
111 |
ctcggggtgttttt-tcacatgtgtcataggaaggaatattttgagactttggctctaaaagaaggaggagttgttcgactcggaaataacaaaacttgc |
209 |
Q |
| |
|
|||||| || | || ||||||||||| ||||||| |||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| | ||| |
|
|
| T |
16263249 |
ctcgggatgctcttatcacatgtgtcctaggaagaaatattttgagactttggctctaaaataaggaggagttgttcgactcagaaataacaaagcgtgc |
16263150 |
T |
|
| Q |
210 |
aaagtccaaggcatgggatccattcgtctaaagatgtttgatggtcgtgaattccttctcacggatgtgacgtttg |
285 |
Q |
| |
|
||||||||||||||||| | |||||||||||||||||||||| |||||||||||| | | |||||||| ||||| |
|
|
| T |
16263149 |
aaagtccaaggcatgggcaacgttcgtctaaagatgtttgatggccgtgaattccttttaagggatgtgaggtttg |
16263074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 11 - 285
Target Start/End: Original strand, 3324636 - 3324911
Alignment:
| Q |
11 |
cttccgttcaagttgtggtgacgtccaatgaagatggttatgagagtgcgggtgcattagtggttacaagttgggaactggagaagaggtgggttttgga |
110 |
Q |
| |
|
||||||| ||||||| | | ||||||||||||||||||||||||| ||||||||| ||||||| ||||||||||||| ||||||||| ||||| ||||| |
|
|
| T |
3324636 |
cttccgtgcaagttgcgaaggcgtccaatgaagatggttatgagagggcgggtgcactagtggtcacaagttgggaaccggagaagagttgggtgttgga |
3324735 |
T |
|
| Q |
111 |
ctcggggtgttttt-tcacatgtgtcataggaaggaatattttgagactttggctctaaaagaaggaggagttgttcgactcggaaataacaaaacttgc |
209 |
Q |
| |
|
|||||| || | || | ||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||| ||| | ||| |
|
|
| T |
3324736 |
ctcgggatgctcttattacatgtgtcctaggaaggaatattttgatactttggctctaaaagaaggaggagttgtttgactcggaaataaaaaagcatgc |
3324835 |
T |
|
| Q |
210 |
aaagtccaaggcatgggatccattcgtctaaagatgtttgatggtcgtgaattccttctcacggatgtgacgtttg |
285 |
Q |
| |
|
|||| |||||||||||| || |||||||||||||||||||||| |||||||||||| | | |||||||| ||||| |
|
|
| T |
3324836 |
aaagcccaaggcatgggcaccgttcgtctaaagatgtttgatggccgtgaattccttttaaaggatgtgaggtttg |
3324911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 11 - 279
Target Start/End: Complemental strand, 8516081 - 8515812
Alignment:
| Q |
11 |
cttccgttcaagttgtggtgacgtccaatgaagatggttatgagagtgcgggtgcattagtggttacaagttgggaactggagaagaggtgggttttgga |
110 |
Q |
| |
|
|||| |||||||||| || | | || |||||||| ||||||||||||||||||||| ||||||| ||||||||||||| ||||||||| | ||||||||| |
|
|
| T |
8516081 |
cttcggttcaagttgcggaggcttcgaatgaagaaggttatgagagtgcgggtgcactagtggtaacaagttgggaaccggagaagagttaggttttgga |
8515982 |
T |
|
| Q |
111 |
ctcggggtgttttt-tcacatgtgtcataggaaggaatattttgagactttggctctaaaagaaggaggagttgttcgactcggaaataacaaaacttgc |
209 |
Q |
| |
|
|||||| || | || ||||||| | | ||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
8515981 |
ctcgggatgctcttatcacatgagccctagaaaggaatattttgagactttgattctaaaagaaggaggagttgttcgactcggaaataacaaagcttgc |
8515882 |
T |
|
| Q |
210 |
aaagtccaaggcatgggatccattcgtctaaagatgtttgatggtcgtgaattccttctcacggatgtga |
279 |
Q |
| |
|
|||||||||||||||||| | |||||||||||||||||||||| |||||||||||| | | |||||||| |
|
|
| T |
8515881 |
aaagtccaaggcatgggaaacgttcgtctaaagatgtttgatggccgtgaattccttttaagggatgtga |
8515812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 11 - 285
Target Start/End: Original strand, 9602947 - 9603222
Alignment:
| Q |
11 |
cttccgttcaagttgtggtgacgtccaatgaagatggttatgagagtgcgggtgcattagtggttacaagttgggaactggagaagaggtgggttttgga |
110 |
Q |
| |
|
||||||||||||||| || | |||| |||||||||||||||||||||||||||||| ||||||| ||||||||||||| ||||||||| ||||||||||| |
|
|
| T |
9602947 |
cttccgttcaagttgcggaggcgtcaaatgaagatggttatgagagtgcgggtgcactagtggtcacaagttgggaaccggagaagagttgggttttgga |
9603046 |
T |
|
| Q |
111 |
ctcggggtg-ttttttcacatgtgtcataggaaggaatattttgagactttggctctaaaagaaggaggagttgttcgactcggaaataacaaaacttgc |
209 |
Q |
| |
|
|||||| || | || ||| ||||||| ||| |||||||||||||||||||||||||||| |||||||| ||||||||||||| ||||||||||| | ||| |
|
|
| T |
9603047 |
ctcgggatgctcttatcatatgtgtcctagaaaggaatattttgagactttggctctaagagaaggagaagttgttcgactcagaaataacaaagcgtgc |
9603146 |
T |
|
| Q |
210 |
aaagtccaaggcatgggatccattcgtctaaagatgtttgatggtcgtgaattccttctcacggatgtgacgtttg |
285 |
Q |
| |
|
||||||||| |||||| ||||||||| ||||||||||||| |||||||||||| | | |||||||| ||||| |
|
|
| T |
9603147 |
aaagtccaaagcatggacaatattcgtctatagatgtttgatggccgtgaattccttttaaaggatgtgaggtttg |
9603222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 11 - 279
Target Start/End: Complemental strand, 32479327 - 32479058
Alignment:
| Q |
11 |
cttccgttcaagttgtggtgacgtccaatgaagatggttatgagagtgcgggtgcattagtggttacaagttgggaactggagaagaggtgggttttgga |
110 |
Q |
| |
|
|||| |||||||||| || | | || |||||||| |||||||||||||||||||| ||||||| ||||||||||||| ||||||||| ||||||||||| |
|
|
| T |
32479327 |
cttcggttcaagttgcggaggcttcgaatgaagaaggttatgagagtgcgggtgcgctagtggtaacaagttgggaaccggagaagagttgggttttgga |
32479228 |
T |
|
| Q |
111 |
ctcggggtgttttt-tcacatgtgtcataggaaggaatattttgagactttggctctaaaagaaggaggagttgttcgactcggaaataacaaaacttgc |
209 |
Q |
| |
|
|||||| || | || ||||||| | | ||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
32479227 |
ctcgggatgctcttatcacatgagccctagaaaggaatattttgagactttgattctaaaagaaggaggagttgttcgactcggaaataacaaagcttgc |
32479128 |
T |
|
| Q |
210 |
aaagtccaaggcatgggatccattcgtctaaagatgtttgatggtcgtgaattccttctcacggatgtga |
279 |
Q |
| |
|
||||||||||||||||| | |||||||||||||||||||||| |||||||||||| | | |||||||| |
|
|
| T |
32479127 |
aaagtccaaggcatgggcaacgttcgtctaaagatgtttgatggccgtgaattccttttaagggatgtga |
32479058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 16 - 284
Target Start/End: Original strand, 2673325 - 2673594
Alignment:
| Q |
16 |
gttcaagttgtggtgacgtccaatgaagatggttatgagagtgcgggtgcattagtggttacaagttgggaactggagaagaggtgggttttggactcgg |
115 |
Q |
| |
|
|||||||||| || | | || |||||||| |||||||||||||||||||| ||||||| ||||||||||||| ||||||||| | |||||||||||||| |
|
|
| T |
2673325 |
gttcaagttgcggaggcttcgaatgaagaaggttatgagagtgcgggtgcgctagtggtaacaagttgggaaccggagaagagttaggttttggactcgg |
2673424 |
T |
|
| Q |
116 |
ggtgttttt-tcacatgtgtcataggaaggaatattttgagactttggctctaaaagaaggaggagttgttcgactcggaaataacaaaacttgcaaagt |
214 |
Q |
| |
|
| || | || ||||||| | | ||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
2673425 |
gatgctcttatcacatgagccctagaaaggaatattttgagactttgattctaaaagaaggaggagttgttcgactcggaaataacaaagcttgcaaagt |
2673524 |
T |
|
| Q |
215 |
ccaaggcatgggatccattcgtctaaagatgtttgatggtcgtgaattccttctcacggatgtgacgttt |
284 |
Q |
| |
|
|||||||||||| | |||||||||||||||||||||| |||||||||||| | | |||||||| |||| |
|
|
| T |
2673525 |
ccaaggcatgggcaacgttcgtctaaagatgtttgatggccgtgaattccttttaagggatgtgaggttt |
2673594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 37 - 284
Target Start/End: Original strand, 28490299 - 28490547
Alignment:
| Q |
37 |
aatgaagatggttatgagagtgcgggtgcattagtggttacaagttgggaactggagaagaggtgggttttggactcggggtgttttt-tcacatgtgtc |
135 |
Q |
| |
|
|||||||| ||||||||||||||||||||| ||||||| ||||||||||||| ||||||||| || |||||||||||||| || | || ||||||||||| |
|
|
| T |
28490299 |
aatgaagagggttatgagagtgcgggtgcactagtggtaacaagttgggaaccggagaagagctgagttttggactcgggatgctcttatcacatgtgtc |
28490398 |
T |
|
| Q |
136 |
ataggaaggaatattttgagactttggctctaaaagaaggaggagttgttcgactcggaaataacaaaacttgcaaagtccaaggcatgggatccattcg |
235 |
Q |
| |
|
||| || |||||||||||||||||| ||| ||||||||||||||||||||||| |||||||||||| |||||||||||||||| ||||| | |||| |
|
|
| T |
28490399 |
ctagaaatgaatattttgagactttgattcttaaagaaggaggagttgttcgacttggaaataacaaagcttgcaaagtccaaggtatgggcaacgttcg |
28490498 |
T |
|
| Q |
236 |
tctaaagatgtttgatggtcgtgaattccttctcacggatgtgacgttt |
284 |
Q |
| |
|
|||||||||||||||||| |||||||||||| | | |||||||| |||| |
|
|
| T |
28490499 |
tctaaagatgtttgatggccgtgaattccttttaagggatgtgaggttt |
28490547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 208 - 285
Target Start/End: Complemental strand, 1309660 - 1309583
Alignment:
| Q |
208 |
gcaaagtccaaggcatgggatccattcgtctaaagatgtttgatggtcgtgaattccttctcacggatgtgacgtttg |
285 |
Q |
| |
|
|||| |||||||||||||| | |||||||||||||||||||||| |||||||||||| | | |||||||| ||||| |
|
|
| T |
1309660 |
gcaacgtccaaggcatgggcaacgttcgtctaaagatgtttgatggccgtgaattccttttaagggatgtgaggtttg |
1309583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 152; Significance: 2e-80; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 11 - 265
Target Start/End: Original strand, 47099918 - 47100173
Alignment:
| Q |
11 |
cttccgttcaagttgtggtgacgtccaatgaagatggttatgagagtgcgggtgcattagtggttacaagttgggaactggagaagaggtgggttttgga |
110 |
Q |
| |
|
|||||||||||||||||| | | ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||| || |||||||| |
|
|
| T |
47099918 |
cttccgttcaagttgtggaggcttccaatgaagatggttatgagagtgcgggtgcactagtggttacaagttgggaaccggagaagagttgagttttgga |
47100017 |
T |
|
| Q |
111 |
ctcggggtgttttt-tcacatgtgtcataggaaggaatattttgagactttggctctaaaagaaggaggagttgttcgactcggaaataacaaaacttgc |
209 |
Q |
| |
|
| || || | || ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||| | ||| |
|
|
| T |
47100018 |
ccttggatgctcttatcacatgtgtcataggaagaaatattttgagactttggctctaaaagaaggaggagttgtttgactcgaaaataacaaagcgtgc |
47100117 |
T |
|
| Q |
210 |
aaagtccaaggcatgggatccattcgtctaaagatgtttgatggtcgtgaattcct |
265 |
Q |
| |
|
||||||||||||||||| | ||||||||||||||||||||| ||||||||||| |
|
|
| T |
47100118 |
aaagtccaaggcatgggcactgttcgtctaaagatgtttgatgaccgtgaattcct |
47100173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 11 - 285
Target Start/End: Complemental strand, 41397226 - 41396951
Alignment:
| Q |
11 |
cttccgttcaagttgtggtgacgtccaatgaagatggttatgagagtgcgggtgcattagtggttacaagttgggaactggagaagaggtgggttttgga |
110 |
Q |
| |
|
|||| |||||||||| || | | || ||| |||| ||||||||||||||||||||| ||||||| ||||||||||||| ||||||||| ||||||||||| |
|
|
| T |
41397226 |
cttcggttcaagttgcggaggcttcaaataaagaaggttatgagagtgcgggtgcactagtggtaacaagttgggaaccggagaagagttgggttttgga |
41397127 |
T |
|
| Q |
111 |
ctcggggtgttttt-tcacatgtgtcataggaaggaatattttgagactttggctctaaaagaaggaggagttgttcgactcggaaataacaaaacttgc |
209 |
Q |
| |
|
|||||| || | || ||||||||||| ||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
41397126 |
ctcgggatgctcttatcacatgtgtcctagaaaggaatattttgagactttgattctaaaagaaggaggagttgttcgactcggaaataacaaagcttgc |
41397027 |
T |
|
| Q |
210 |
aaagtccaaggcatgggatccattcgtctaaagatgtttgatggtcgtgaattccttctcacggatgtgacgtttg |
285 |
Q |
| |
|
||||||||||||||||| | || ||||||||||||||||||| |||||||||||| | | |||||||| ||||| |
|
|
| T |
41397026 |
aaagtccaaggcatgggcaacgtttgtctaaagatgtttgatggccgtgaattccttttaagggatgtgaggtttg |
41396951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 11 - 218
Target Start/End: Original strand, 19359938 - 19360146
Alignment:
| Q |
11 |
cttccgttcaagttgtggtgacgtccaatgaagatggttatgagagtgcgggtgcattagtggttacaagttgggaactggagaagaggtgggttttgga |
110 |
Q |
| |
|
||||||| ||||||| || | | || |||||||| ||||||||||||||||||||| ||||||||||||||||||||| ||||||||| ||||||||||| |
|
|
| T |
19359938 |
cttccgtccaagttgcggaggcttcaaatgaagaaggttatgagagtgcgggtgcactagtggttacaagttgggaaccggagaagagttgggttttgga |
19360037 |
T |
|
| Q |
111 |
ctcggggtgttttt-tcacatgtgtcataggaaggaatattttgagactttggctctaaaagaaggaggagttgttcgactcggaaataacaaaacttgc |
209 |
Q |
| |
|
|||||| || | || ||||||||||| ||| ||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
19360038 |
ctcgggatgctcttatcacatgtgtcctagaaaggaatattttgaggctttgactctaaaagaaggaggagttgttcgactcggaaataacaaagcttgc |
19360137 |
T |
|
| Q |
210 |
aaagtccaa |
218 |
Q |
| |
|
||||||||| |
|
|
| T |
19360138 |
aaagtccaa |
19360146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 3 - 285
Target Start/End: Original strand, 9024892 - 9025173
Alignment:
| Q |
3 |
tggtggttcttccgttcaagttgtggtgacgtccaatgaagatggttatgagagtgcgggtgcattagtggttacaagttgggaactggagaagaggtgg |
102 |
Q |
| |
|
||||||||||||||||||||||| |||| |||| |||||||||| |||| |||||||||| ||||||| ||||||| | | ||||||||| ||| |
|
|
| T |
9024892 |
tggtggttcttccgttcaagttgcggtggagtccgatgaagatggatatgtc--tgcgggtgcactagtggtcacaagttcgaagtcggagaagagttgg |
9024989 |
T |
|
| Q |
103 |
gttttggactcggggtgttttt-tcacatgtgtcataggaaggaatattttgagacttt-ggctctaaaagaaggaggagttgttcgactcggaaataac |
200 |
Q |
| |
|
||||||||| ||||| || || ||||||||||| ||| |||||||||||| ||||||| |||||||||||||| |||||||||||||||||||| |||| |
|
|
| T |
9024990 |
gttttggacctggggttttcttatcacatgtgtcctagaaaggaatattttaagacttttggctctaaaagaagaaggagttgttcgactcggaa-taac |
9025088 |
T |
|
| Q |
201 |
aaaacttgcaaagtccaaggcatgggatccattcgtctaaagatgtttgatggtcgtgaattccttctcacggatgtgacgtttg |
285 |
Q |
| |
|
||| |||||||||||||||||||||| || |||||||||||||||||||| || ||||||||||||| | | |||||| ||||| |
|
|
| T |
9025089 |
aaagcttgcaaagtccaaggcatgggcaccgttcgtctaaagatgtttgattgttgtgaattccttctaaggtatgtgaggtttg |
9025173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 3 - 150
Target Start/End: Original strand, 17346605 - 17346753
Alignment:
| Q |
3 |
tggtggttcttccgttcaagttgtggtgacgtccaatgaagatggttatgagagtgcgggtgcattagtggttacaagttgggaactggagaagaggtgg |
102 |
Q |
| |
|
||||||||||||| |||||||||||||| ||| |||||||||||||| |||||| ||||||||||||||| ||||||||||||| |||||||| | | |
|
|
| T |
17346605 |
tggtggttcttccattcaagttgtggtggcgtttgatgaagatggttattagagtgtgggtgcattagtggtcacaagttgggaaccagagaagagttag |
17346704 |
T |
|
| Q |
103 |
gttttggactcggggtg-ttttttcacatgtgtcataggaaggaatatt |
150 |
Q |
| |
|
|||||||| |||||||| | || ||||||||||| |||||| ||||||| |
|
|
| T |
17346705 |
gttttggagtcggggtgctcttatcacatgtgtcctaggaatgaatatt |
17346753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 144; Significance: 1e-75; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 11 - 285
Target Start/End: Complemental strand, 19348265 - 19347990
Alignment:
| Q |
11 |
cttccgttcaagttgtggtgacgtccaatgaagatggttatgagagtgcgggtgcattagtggttacaagttgggaactggagaagaggtgggttttgga |
110 |
Q |
| |
|
|||| |||||||||| || | | || |||||||| |||||||||||||| ||||| ||||||| ||||||||||||| ||||||||| ||||||||||| |
|
|
| T |
19348265 |
cttcggttcaagttgcggaggcttcaaatgaagaaggttatgagagtgcaggtgcgctagtggtaacaagttgggaaccggagaagagttgggttttgga |
19348166 |
T |
|
| Q |
111 |
ctcggggtgttttt-tcacatgtgtcataggaaggaatattttgagactttggctctaaaagaaggaggagttgttcgactcggaaataacaaaacttgc |
209 |
Q |
| |
|
|||||| || | || ||||||||||| ||| ||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||| ||||| |
|
|
| T |
19348165 |
ctcgggatgctcttatcacatgtgtcctagaaaggaatattttgagactttgattctaaaagaaggaggagttgttcgactcagaaataacaaagcttgc |
19348066 |
T |
|
| Q |
210 |
aaagtccaaggcatgggatccattcgtctaaagatgtttgatggtcgtgaattccttctcacggatgtgacgtttg |
285 |
Q |
| |
|
||||||||||||||||| | |||||||||||||||||||||| |||||||||||| | | |||||||| ||||| |
|
|
| T |
19348065 |
aaagtccaaggcatgggcaacgttcgtctaaagatgtttgatggccgtgaattccttttaagggatgtgaggtttg |
19347990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 12 - 200
Target Start/End: Original strand, 10446526 - 10446715
Alignment:
| Q |
12 |
ttccgttcaagttgtggtgacgtccaatgaagatggttatgagagtgcgggtgcattagtggttacaagttgggaactggagaagaggtgggttttggac |
111 |
Q |
| |
|
|||||||||||||| || | | ||||||| |||||||||||||||||||||||| ||||||| ||||||||||||| ||||||||| |||||||||||| |
|
|
| T |
10446526 |
ttccgttcaagttgcggaggcaaccaatgacgatggttatgagagtgcgggtgcactagtggtcacaagttgggaaccggagaagagttgggttttggac |
10446625 |
T |
|
| Q |
112 |
tcggggtg-ttttttcacatgtgtcataggaaggaatattttgagactttggctctaaaagaaggaggagttgttcgactcggaaataac |
200 |
Q |
| |
|
||||| || | || ||||||||||| ||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
10446626 |
tcgggatgctcttatcacatgtgtcccaggaaggaatattttgatactttggctctaaaagaaagaggagttgttcgactcggaaataac |
10446715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 37 - 166
Target Start/End: Complemental strand, 25402611 - 25402481
Alignment:
| Q |
37 |
aatgaagatggttatgagagtgcgggtgcattagtggttacaagttgggaactggagaagaggtgggttttggactcggggtg-ttttttcacatgtgtc |
135 |
Q |
| |
|
|||||||| ||||||||||||||||||||| ||||||||||||||||||||| |||||||| ||||||||||||||||| || | || ||||||||||| |
|
|
| T |
25402611 |
aatgaagaaggttatgagagtgcgggtgcactagtggttacaagttgggaaccagagaagagttgggttttggactcgggatgctcttatcacatgtgtc |
25402512 |
T |
|
| Q |
136 |
ataggaaggaatattttgagactttggctct |
166 |
Q |
| |
|
||| ||||||||||||||||||||| |||| |
|
|
| T |
25402511 |
ctagaaaggaatattttgagactttgactct |
25402481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0078 (Bit Score: 140; Significance: 2e-73; HSPs: 1)
Name: scaffold0078
Description:
Target: scaffold0078; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 39 - 285
Target Start/End: Complemental strand, 35969 - 35722
Alignment:
| Q |
39 |
tgaagatggttatgagagtgcgggtgcattagtggttacaagttgggaactggagaagaggtgggttttggactcggggtgttttt-tcacatgtgtcat |
137 |
Q |
| |
|
||||||||||||||| |||| |||||| |||||||||||||||| ||||| |||||||| |||||||||||||||||||| | || ||||||||||| | |
|
|
| T |
35969 |
tgaagatggttatgaaagtgtcggtgcactagtggttacaagttgagaactagagaagagttgggttttggactcggggtgctcttatcacatgtgtctt |
35870 |
T |
|
| Q |
138 |
aggaaggaatattttgagactttggctctaaaagaaggaggagttgttcgactcggaaataacaaaacttgcaaagtccaaggcatgggatccattcgtc |
237 |
Q |
| |
|
| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| |||||||| |||||| |||||| || |||||| |
|
|
| T |
35869 |
atgaaggaatattttgagaatttggctctaaaagaaggaggagttgttcgactcggaaataaaaaagcttgcaaaatccaagtcatgggcaccgttcgtc |
35770 |
T |
|
| Q |
238 |
taaagatgtttgatggtcgtgaattccttctcacggatgtgacgtttg |
285 |
Q |
| |
|
||||||| |||||||| |||||||||||||| | ||||||| ||||| |
|
|
| T |
35769 |
taaagatctttgatggccgtgaattccttctaagagatgtgaggtttg |
35722 |
T |
|
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Target: scaffold0842 (Bit Score: 124; Significance: 8e-64; HSPs: 1)
Name: scaffold0842
Description:
Target: scaffold0842; HSP #1
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 11 - 226
Target Start/End: Original strand, 4294 - 4514
Alignment:
| Q |
11 |
cttccgttcaagttgtggtgacgtccaatgaagatggttatgagagtgcgggtgcattagtggttacaagttgggaactggagaagaggtgggttttgga |
110 |
Q |
| |
|
||||||||||| ||| | | |||| |||||||||||||||||||||||||||||| ||||||||||||||||| || ||||||||| ||||||||||| |
|
|
| T |
4294 |
cttccgttcaatttgcagaggcgtcaaatgaagatggttatgagagtgcgggtgcactagtggttacaagttggaaatcggagaagagttgggttttgga |
4393 |
T |
|
| Q |
111 |
ctcggggtgttttt-tcacatgtgtcataggaaggaatattttgagactttggctctaaaagaaggaggagttgttcgactcggaaataacaaaact--- |
206 |
Q |
| |
|
|||||| || | || ||||||||||| ||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
4394 |
ctcgggatgctcttatcacatgtgtcctaggaagaaatattttgagactttggctttaaaagaaggaggagttgttcgactcggaaataacaaagctagc |
4493 |
T |
|
| Q |
207 |
-tgcaaagtccaaggcatggg |
226 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
4494 |
gtgcaaagtccaaggcatggg |
4514 |
T |
|
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Target: scaffold0028 (Bit Score: 101; Significance: 4e-50; HSPs: 1)
Name: scaffold0028
Description:
Target: scaffold0028; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 11 - 202
Target Start/End: Original strand, 150055 - 150247
Alignment:
| Q |
11 |
cttccgttcaagttgtggtgacgtccaatgaagatggttatgagagtgcgggtgcattagtggttacaagttgggaactggagaagaggtgggttttgga |
110 |
Q |
| |
|
|||| |||||||||| || | | || |||||||| |||||||||||||||||||| ||||||| ||||||||||||| ||||||||| ||||||||||| |
|
|
| T |
150055 |
cttcggttcaagttgcggaggcttcgaatgaagaaggttatgagagtgcgggtgcgctagtggtaacaagttgggaaccggagaagagttgggttttgga |
150154 |
T |
|
| Q |
111 |
ctcggggtg-ttttttcacatgtgtcataggaaggaatattttgagactttggctctaaaagaaggaggagttgttcgactcggaaataacaa |
202 |
Q |
| |
|
|||||| || | || ||||||| | | ||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
150155 |
ctcgggatgctcttatcacatgagccctagaaaggaatattttgagactttgattctaaaagaaggaggagttgttcgactcggaaataacaa |
150247 |
T |
|
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Target: scaffold0188 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: scaffold0188
Description:
Target: scaffold0188; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 37 - 161
Target Start/End: Original strand, 19065 - 19190
Alignment:
| Q |
37 |
aatgaagatggttatgagagtgcgggtgcattagtggttacaagttgggaactggagaagaggtgggttttggactcggggtg-ttttttcacatgtgtc |
135 |
Q |
| |
|
|||||||| ||||||||||||||||||||| ||||||||||||||||||||| ||||||||| | ||||||||||||||| || | || ||||||||||| |
|
|
| T |
19065 |
aatgaagaaggttatgagagtgcgggtgcactagtggttacaagttgggaaccggagaagagataggttttggactcgggatgctcttatcacatgtgtc |
19164 |
T |
|
| Q |
136 |
ataggaaggaatattttgagactttg |
161 |
Q |
| |
|
||| ||||||||||||||||||||| |
|
|
| T |
19165 |
ctagaaaggaatattttgagactttg |
19190 |
T |
|
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