View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9365_low_19 (Length: 296)
Name: NF9365_low_19
Description: NF9365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9365_low_19 |
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Alignment Details
Target: chr4 (Bit Score: 253; Significance: 1e-141; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 14 - 278
Target Start/End: Complemental strand, 21238948 - 21238684
Alignment:
| Q |
14 |
cagagattatgtctattgttacatcttgcactttgaggggcatgtctggccgggaaaagatatcttcccaacaataggaggccggtgttaagaggtcagt |
113 |
Q |
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| T |
21238948 |
cagagattatgtctattgttacatgttgcactttgaggggcatgtctggccgggaaaagatatcttcccaacaataggaggccggtgttaagaggtcagt |
21238849 |
T |
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| Q |
114 |
ctgctcctctatccgtgcctacaagcaattgttatgaattcatggattagagggaggaaaggttgtgtgcataagagagatatagagcatataaaaatta |
213 |
Q |
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| T |
21238848 |
ctgctcctctatccgtgcctacaagcaattgttacgaattcatggattagagggaggaaaggttgtgtgcataagagagatatagagcatataaaaatta |
21238749 |
T |
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| Q |
214 |
aggttgtatacataagagagagatgtagagaatattaaaattctctctgaaggtgacactgaatt |
278 |
Q |
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| T |
21238748 |
aggttgtatacataagagagagatatagagaatattaaaattctctctgaaggtgacactgaatt |
21238684 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 54; Significance: 5e-22; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 25 - 197
Target Start/End: Complemental strand, 3374134 - 3373964
Alignment:
| Q |
25 |
tctattgttacatcttgcactttgaggggcatgtctggccgggaaaagatatcttcccaacaataggaggccggtgttaagaggtcagtctgctcctcta |
124 |
Q |
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| T |
3374134 |
tctattgtcacatgttgtacttgaatgggcatggctggccctgaaaagatatcttcccaacaataggatgtgggcgttaaaaggacagtctcctcctcaa |
3374035 |
T |
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| Q |
125 |
tccgtgcctacaagcaattgttatgaattcatggattagagggaggaaaggttgtgtgcataagagagatata |
197 |
Q |
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| T |
3374034 |
tccgtgcctacatgcaattgtaacaaattcatggatcaaagg--ggaaaggtagcatgcataagagaaatata |
3373964 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 67 - 210
Target Start/End: Complemental strand, 1794110 - 1793968
Alignment:
| Q |
67 |
gaaaagatatcttcccaacaataggaggccggtgttaagaggtcagtctgctcctctatccgtgcctacaagcaattgttatgaattcatggattagagg |
166 |
Q |
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| T |
1794110 |
gaaaagatatcttcccaacaataggaatcgcttgttaaagggacaatttcctcctcaagccgtgcctacatgcaattgttacaaattcatggatcaaagg |
1794011 |
T |
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| Q |
167 |
gaggaaaggttgtgtgcataagagagatatagagcatataaaaa |
210 |
Q |
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| T |
1794010 |
-aggaaagatagtatgcataagagagacatagagcatattaaaa |
1793968 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 51 - 142
Target Start/End: Complemental strand, 3366402 - 3366311
Alignment:
| Q |
51 |
gggcatgtctggccgggaaaagatatcttcccaacaataggaggccggtgttaagaggtcagtctgctcctctatccgtgcctacaagcaat |
142 |
Q |
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| T |
3366402 |
gggcatggctggccctgaaaagatatcttacgaacaataggatgtgggagttaaaaggacagtctgctccacaaaccgtgcctacatgcaat |
3366311 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 113
Target Start/End: Original strand, 3217295 - 3217340
Alignment:
| Q |
68 |
aaaagatatcttcccaacaataggaggccggtgttaagaggtcagt |
113 |
Q |
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| T |
3217295 |
aaaagacatctttccaacaataggaggcgggtgttaaaaggtcagt |
3217340 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 34 - 158
Target Start/End: Complemental strand, 20924538 - 20924414
Alignment:
| Q |
34 |
acatcttgcactttgaggggcatgtctggccgggaaaagatatcttcccaacaataggaggccggtgttaagaggtcagtctgctcctctatccgtgcct |
133 |
Q |
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|||| ||||| ||||||| |||| |||||| |||||||||||||||||||||||||||| ||||||| ||||| |||| ||||| | ||||||| |
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| T |
20924538 |
acatgttgcaatttgaggagcatatctggctccgaaaagatatcttcccaacaataggaggtgtgtgttaaaaggtctgtctcctccttaagtcgtgcct |
20924439 |
T |
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| Q |
134 |
acaagcaattgttatgaattcatgg |
158 |
Q |
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||| |||||||||| ||||||||| |
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| T |
20924438 |
acatgcaattgttacaaattcatgg |
20924414 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 104
Target Start/End: Complemental strand, 39275273 - 39275220
Alignment:
| Q |
51 |
gggcatgtctggccgggaaaagatatcttcccaacaataggaggccggtgttaa |
104 |
Q |
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| T |
39275273 |
gggcatggctggccctgaaaaggtatcttcccaacaataggagcccagtgttaa |
39275220 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 67 - 164
Target Start/End: Complemental strand, 17971102 - 17971005
Alignment:
| Q |
67 |
gaaaagatatcttcccaacaataggaggccggtgttaagaggtcagtctgctcctctatccgtgcctacaagcaattgttatgaattcatggattaga |
164 |
Q |
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||||||||||||||| ||||| |||| | ||||||| ||||||||||||||||| | |||||||||| | |||||||| ||||||| ||||||| |
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| T |
17971102 |
gaaaagatatcttccatacaattggagacaggtgttacaaggtcagtctgctcctcaagacgtgcctacatgaaattgttacaaattcatagattaga |
17971005 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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