View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9365_low_25 (Length: 242)
Name: NF9365_low_25
Description: NF9365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9365_low_25 |
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Alignment Details
Target: chr3 (Bit Score: 214; Significance: 1e-117; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 2 - 227
Target Start/End: Complemental strand, 38841422 - 38841197
Alignment:
| Q |
2 |
ctcaaagttacaatcgaaccggaagtgaatacagtttcagtttataataatggtgacagtgttccagtagggcttcataaggaagagaatgtttatgttc |
101 |
Q |
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| T |
38841422 |
ctcaaagttacaatcgaaccggaagggaatacagtttcagtttataataatggtgaaggtgttccagtagggcttcataaggaagagaatgtttatgttc |
38841323 |
T |
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| Q |
102 |
ctgaattgttctttggtcaccttaactatgattataatgtgaagaaaactactggtgggagaaatggttatggtgctaagctcaccaatattttttcgaa |
201 |
Q |
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| T |
38841322 |
ctgaattgttctttggtcaccttaactatgattataatgtgaagaaaactactggtgggagaaatggttatggtgctaagctcaccaatattttttcgaa |
38841223 |
T |
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| Q |
202 |
ggagtttgttattgagattgttgatg |
227 |
Q |
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| T |
38841222 |
ggagtttgttattgagattgttgatg |
38841197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 135 - 216
Target Start/End: Complemental strand, 9877358 - 9877277
Alignment:
| Q |
135 |
ataatgtgaagaaaactactggtgggagaaatggttatggtgctaagctcaccaatattttttcgaaggagtttgttattga |
216 |
Q |
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| T |
9877358 |
ataatgtgaagaaaactactggtggaagaaacggttatggtgctaagctcacgaatattttctcgactgagtttgttattga |
9877277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 120
Target Start/End: Complemental strand, 9877477 - 9877385
Alignment:
| Q |
28 |
gaatacagtttcagtttataataatggtgacagtgttccagtagggcttcataaggaagagaatgtttatgttcctgaattgttctttggtca |
120 |
Q |
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| T |
9877477 |
gaatacggtttctgtttacaataacggtgacggtgttccggttgagattcatcaagaagagaaggtttatgttccggagttgatttttggtca |
9877385 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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