View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9365_low_28 (Length: 232)
Name: NF9365_low_28
Description: NF9365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9365_low_28 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 132; Significance: 1e-68; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 82 - 217
Target Start/End: Original strand, 33187351 - 33187486
Alignment:
| Q |
82 |
agttagaaaaattctactgcaaattaaaccaaattttcaatatggcctcaccactattgttttcttctctaaaattgatcttgatcttctcaaagtttat |
181 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33187351 |
agttagaaaaattctactgcaaattaaaccaaattttcaatatggcctcaccactattgttttcttctctaaaattgatcttgatcttctcaaagtttat |
33187450 |
T |
|
| Q |
182 |
actgcagcaatggtatattccaattacactactatg |
217 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||| |
|
|
| T |
33187451 |
actgcagcaatggtataatccaattacactactatg |
33187486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University