View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9365_low_5 (Length: 521)
Name: NF9365_low_5
Description: NF9365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9365_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 422; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 40 - 504
Target Start/End: Complemental strand, 39866139 - 39865674
Alignment:
| Q |
40 |
atccttttgtgtataaatttgttcaaccttgacttttcatcttctaa-acatactaacaatatagctaagaagtatagtttaaaaacatatttctaataa |
138 |
Q |
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| T |
39866139 |
atccttttgtgtataaatttgttcaaccttgacttttcatcttctaagacatactaacaatatagctaagaagtatagtttaaaaacatatttctaataa |
39866040 |
T |
|
| Q |
139 |
cttaaactgagatctatatttatggacatcattgttttaaatacactatataattagaaacatataaagtattagtatactgtctttgtgtaattgtgtt |
238 |
Q |
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| T |
39866039 |
cttaaactgaggtttatatttatggacatcattgtttcaaatacattatataattagaaacatagaaagtattagtatactgtctttgtgtaattgtgtt |
39865940 |
T |
|
| Q |
239 |
cctactccattctggcagtcctaactcacaggcttgtttaacaaagcagttcactgcaatcacagcttgcactcaatgtctctctcttctgcatcaatag |
338 |
Q |
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| T |
39865939 |
cctactccattctggcagtcctaactcacaggcttgtttaacaaagcagttcactgcaatcacagcttgcactcaatgtctctctcttctgcatcaatag |
39865840 |
T |
|
| Q |
339 |
gtctgcaattgtactttcattttttatatcaaatacacgtccatctcttcttctagtatgcttgcatgttattatatcataattttcttcaaaattgtat |
438 |
Q |
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| T |
39865839 |
gtctgcaattgtactttaattttttatatcaaatacacgtccatctcttcttctagtatgcttgcatgttattatatcataattttcttcaaaattgtat |
39865740 |
T |
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| Q |
439 |
tctattactattttctctaatgaacctgaaattcatatatataagttacacagtcactctattaac |
504 |
Q |
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| T |
39865739 |
tctattactattttctctaatgaacctgaaattcatatacataagttacacattcacactattaac |
39865674 |
T |
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Target: chr4 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 34 - 82
Target Start/End: Original strand, 44532297 - 44532345
Alignment:
| Q |
34 |
aacaccatccttttgtgtataaatttgttcaaccttgacttttcatctt |
82 |
Q |
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| T |
44532297 |
aacaccatccttttgtgtatggatatgttcaactatgacttttcatctt |
44532345 |
T |
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