View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9366_high_102 (Length: 210)
Name: NF9366_high_102
Description: NF9366
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9366_high_102 |
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Alignment Details
Target: chr4 (Bit Score: 109; Significance: 5e-55; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 19 - 131
Target Start/End: Complemental strand, 45026865 - 45026753
Alignment:
| Q |
19 |
atacgcactctgtatagttaatgcaggtatacaacaattgcaaagcacatacaaaattggtaaggtagaggccgaatgaataatagttcaacaagagaac |
118 |
Q |
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| T |
45026865 |
atacgcactctgtatagttaatacaggtatacaacaattgcaaagcacatacaaaattggtaaggtagaggccgaatgaataatagttcaacaagagaac |
45026766 |
T |
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| Q |
119 |
aataaaataacac |
131 |
Q |
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| T |
45026765 |
aataaaataacac |
45026753 |
T |
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Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 153 - 195
Target Start/End: Complemental strand, 45026726 - 45026684
Alignment:
| Q |
153 |
tactttaacaaccaaaagctccaaagttgcacctcagtctctg |
195 |
Q |
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| T |
45026726 |
tactttaacaaccaaaagctccaaagttgcacctcagtctctg |
45026684 |
T |
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