View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9366_high_104 (Length: 207)
Name: NF9366_high_104
Description: NF9366
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9366_high_104 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 152; Significance: 1e-80; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 22 - 189
Target Start/End: Original strand, 32298150 - 32298317
Alignment:
| Q |
22 |
atcatttaaaccaaatgatgcttaaagaaagattaaaaacaatacataagacaatcaaagatatggaaaactgataattgttcatgaaaaaatgttgaac |
121 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32298150 |
atcatttaaaccaaatgatgcttaaagaaagattaaaaaaaatacataagacaatcaaagatatggaaaactgataattgttcatgaaaaaatgttgaac |
32298249 |
T |
|
| Q |
122 |
cctaaaagcaaaaggataggtccacttatgggcagttgataaatgccacaatagttgagggccagggt |
189 |
Q |
| |
|
|||||||| ||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
32298250 |
cctaaaagtaaaaggataggtccacttacgggcaattgataaatgccacaatagttgagggccagggt |
32298317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 127 - 189
Target Start/End: Original strand, 32299505 - 32299567
Alignment:
| Q |
127 |
aagcaaaaggataggtccacttatgggcagttgataaatgccacaatagttgagggccagggt |
189 |
Q |
| |
|
||||||||||||||||||||| | |||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
32299505 |
aagcaaaaggataggtccactaactggcagttgctaaatgccacaatagttgagggccagggt |
32299567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University