View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9366_high_18 (Length: 448)

Name: NF9366_high_18
Description: NF9366
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9366_high_18
NF9366_high_18
[»] chr1 (7 HSPs)
chr1 (37-205)||(21899187-21899355)
chr1 (29-199)||(17663409-17663579)
chr1 (29-199)||(17700400-17700570)
chr1 (282-384)||(17699894-17699996)
chr1 (284-383)||(17663968-17664067)
chr1 (390-443)||(17664119-17664175)
chr1 (143-199)||(22663717-22663773)
[»] chr8 (2 HSPs)
chr8 (61-187)||(44989761-44989884)
chr8 (53-104)||(44989252-44989303)
[»] chr4 (1 HSPs)
chr4 (64-199)||(51220073-51220204)
[»] chr7 (1 HSPs)
chr7 (43-123)||(441040-441120)


Alignment Details
Target: chr1 (Bit Score: 137; Significance: 2e-71; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 37 - 205
Target Start/End: Complemental strand, 21899355 - 21899187
Alignment:
Q  37 gtgtgtttgccgcaacgaaaagaacttggtgttgaggttgaagattcccaaagacaagattttgcaaaagtcacaagattgcaaggagcctgcaggctct 136  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| || |||||||||||||| |||| || ||||    
T  21899355 gtgtgtttgccgcaacgaaaagaacttggtgttgaggttgaagattcctaaagacaagattttacaaaaatcgcaagattgcaaggaacctgtagactct 21899256  T
Q  137 aaccgtgatattgaaggcaagaaaaagattagcgaaggtgaaaccgaattagggtcaagagtttctatg 205  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21899255 aaccatgatattgaaggcaagaaaaagattagcgaaggtgaaaccgaattagggtcaagagtttctatg 21899187  T

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Target: chr1; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 29 - 199
Target Start/End: Original strand, 17663409 - 17663579
Alignment:
Q  29 ctaacaaggtgtgtttgccgcaacgaaaagaacttggtgttgaggttgaagattcccaaagacaagattttgcaaaagtcacaagattgcaaggagcctg 128  Q
    ||||||||||||||||||| ||||||||||||||||||| ||| ||||| |||||| ||||||| |||||| ||||  |||||||||| |||||| || |    
T  17663409 ctaacaaggtgtgtttgccacaacgaaaagaacttggtgctgaagttgaggattcctaaagacacgatttttcaaacatcacaagattccaaggaaccag 17663508  T
Q  129 caggctctaaccgtgatattgaaggcaagaaaaagattagcgaaggtgaaaccgaattagggtcaagagtt 199  Q
    |||||||||||| |||||||||||||| ||| ||  ||||||||| |||||||||||||||||||||||||    
T  17663509 caggctctaaccttgatattgaaggcatgaagaatgttagcgaagatgaaaccgaattagggtcaagagtt 17663579  T

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Target: chr1; HSP #3
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 29 - 199
Target Start/End: Complemental strand, 17700570 - 17700400
Alignment:
Q  29 ctaacaaggtgtgtttgccgcaacgaaaagaacttggtgttgaggttgaagattcccaaagacaagattttgcaaaagtcacaagattgcaaggagcctg 128  Q
    ||||||||||||||||||| ||||||||||||||||||| ||| ||||| |||||| ||||||| |||||| ||||  |||||||||| |||||| || |    
T  17700570 ctaacaaggtgtgtttgccacaacgaaaagaacttggtgctgaagttgaggattcctaaagacacgatttttcaaacatcacaagattccaaggaaccag 17700471  T
Q  129 caggctctaaccgtgatattgaaggcaagaaaaagattagcgaaggtgaaaccgaattagggtcaagagtt 199  Q
    |||||||||||| |||||||||||||| ||| ||  ||||| ||| |||||||||||||||||||||||||    
T  17700470 caggctctaaccttgatattgaaggcatgaagaatgttagctaagatgaaaccgaattagggtcaagagtt 17700400  T

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Target: chr1; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 282 - 384
Target Start/End: Complemental strand, 17699996 - 17699894
Alignment:
Q  282 taataataattggtcttttatttagttgagttgaatgcagaatattttatcttatcactatcattttttggaactttcaatggtggaatctatttttgtg 381  Q
    ||||||||||||| |||||||||  |||| ||||||| |||  | |||||||||||||||| ||  ||||||||||||| |||||||||||| |||||||    
T  17699996 taataataattgggcttttatttgattgatttgaatgtagaggaatttatcttatcactattatggtttggaactttcagtggtggaatctacttttgtg 17699897  T
Q  382 aat 384  Q
    |||    
T  17699896 aat 17699894  T

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Target: chr1; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 284 - 383
Target Start/End: Original strand, 17663968 - 17664067
Alignment:
Q  284 ataataattggtcttttatttagttgagttgaatgcagaatattttatcttatcactatcattttttggaactttcaatggtggaatctatttttgtgaa 383  Q
    |||||||||||||||||||||  |||| |||||||||||   ||||||||||||||||| ||  ||  ||||||||| ||||||||| ||||||||||||    
T  17663968 ataataattggtcttttatttgattgatttgaatgcagaggtttttatcttatcactattatggttacgaactttcagtggtggaatttatttttgtgaa 17664067  T

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Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 390 - 443
Target Start/End: Original strand, 17664119 - 17664175
Alignment:
Q  390 gaacaggtgtgaataattaaaactttagat---cagtactttcccctctctgcttct 443  Q
    ||||||||||||||||||||||||||||||    | ||||||||||| |||||||||    
T  17664119 gaacaggtgtgaataattaaaactttagatttctaatactttcccctttctgcttct 17664175  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 143 - 199
Target Start/End: Complemental strand, 22663773 - 22663717
Alignment:
Q  143 gatattgaaggcaagaaaaagattagcgaaggtgaaaccgaattagggtcaagagtt 199  Q
    ||||||||||  ||||| || || | ||||||||||||||||||||||||| |||||    
T  22663773 gatattgaagaaaagaagaaaatcaacgaaggtgaaaccgaattagggtcaggagtt 22663717  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 61 - 187
Target Start/End: Complemental strand, 44989884 - 44989761
Alignment:
Q  61 cttggtgttgaggttgaagattcccaaagacaagattttgcaaaagtcacaagattgcaaggagcctgcaggctctaaccgtgatattgaaggcaagaaa 160  Q
    ||||||| ||||| |||| | ||| ||||| |||||||| | ||  ||||||||||||||||| |||| ||||||||| | ||||||||||    ||||     
T  44989884 cttggtgctgaggctgaataatcctaaagagaagatttttctaacatcacaagattgcaaggaacctgaaggctctaatcatgatattgaa---tagaag 44989788  T
Q  161 aagattagcgaaggtgaaaccgaatta 187  Q
    ||||||| ||||||||||||| |||||    
T  44989787 aagattaacgaaggtgaaaccaaatta 44989761  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 53 - 104
Target Start/End: Original strand, 44989252 - 44989303
Alignment:
Q  53 gaaaagaacttggtgttgaggttgaagattcccaaagacaagattttgcaaa 104  Q
    ||||| |||||||||||||||||||||| ||| |||||||||||||| ||||    
T  44989252 gaaaacaacttggtgttgaggttgaagaatcctaaagacaagatttttcaaa 44989303  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 64 - 199
Target Start/End: Complemental strand, 51220204 - 51220073
Alignment:
Q  64 ggtgttgaggttgaagattcccaaagacaagattttgcaaaagtcacaagattgcaaggagcctgcaggctctaaccgtgatattgaaggcaagaaaaag 163  Q
    |||||||||||| |||||||| |||||| ||||||| ||||  ||||||||||||||||| | ||    ||||||   |||||||||||   |||| |||    
T  51220204 ggtgttgaggttcaagattcctaaagac-agatttttcaaacatcacaagattgcaaggaacatgactcctctaataatgatattgaag---agaagaag 51220109  T
Q  164 attagcgaaggtgaaaccgaattagggtcaagagtt 199  Q
    |||| |||| ||||||| ||||||||||||| ||||    
T  51220108 attaacgaaagtgaaactgaattagggtcaatagtt 51220073  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 43 - 123
Target Start/End: Complemental strand, 441120 - 441040
Alignment:
Q  43 ttgccgcaacgaaaagaacttggtgttgaggttgaagattcccaaagacaagattttgcaaaagtcacaagattgcaagga 123  Q
    ||||| ||| |||||||| |||| ||||||||| || ||||| ||||  |||||||| ||||  |||||||||||||||||    
T  441120 ttgccacaatgaaaagaagttggcgttgaggttcaaaattcctaaaggtaagatttttcaaacatcacaagattgcaagga 441040  T

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