View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9366_high_24 (Length: 400)
Name: NF9366_high_24
Description: NF9366
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9366_high_24 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 360; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 1 - 400
Target Start/End: Complemental strand, 22235873 - 22235483
Alignment:
| Q |
1 |
gggttgattttgtaggcgaccctccatctccctcttcatctccttctaattcctcaacttcttttccttccatatgcatccctgccaactgaatagcgaa |
100 |
Q |
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| T |
22235873 |
gggttgattttgtaggcgaccctccatctccctcttcatctccttctaattcctcaacttcttttccttccatatgcatccctgccaactgaatagcgaa |
22235774 |
T |
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| Q |
101 |
aacaatccaagtatttgaagttgctcaaaagggaagtgtaaaaacacaaataatgtatatttgaactcttccttcatcactccattcattaactttcaca |
200 |
Q |
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| T |
22235773 |
aacaatccaagtatttgaagttgctcaaaagggaagtgtaaaaacacaaataatgtatatttgaactcttccttcatcactccattcattaactttcaca |
22235674 |
T |
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| Q |
201 |
tctcaacatttcagtcgaaaaacgaaaagaacatgatacatgttgactgagacattcttttgaattgcgttatatgacatacaaatttgacatcaaaatt |
300 |
Q |
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| T |
22235673 |
tctcaacatttcagtcgaaaaacgaaaagaacatgatacatgttgactgagacattcttttgaattgcgt---------tacaaatttgacatcaaaatt |
22235583 |
T |
|
| Q |
301 |
cgacaacaacttagatagttaacactttcaaatatgtgattaactacattcaactgatggttacttagtgtaataagacatcacaaatcattaaccgtcc |
400 |
Q |
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| T |
22235582 |
cgacaacaacttagatggttaacactttcaaatatgtgattaactacattcaactgatggttaattagtgtaataagacatcacaaatcattaaccgtcc |
22235483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 283 - 336
Target Start/End: Original strand, 19421588 - 19421642
Alignment:
| Q |
283 |
aaatttgacatcaaaattcgacaacaacttagatagttaacac-tttcaaatatg |
336 |
Q |
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|||||||||||||||||||| ||||||||||||| | |||||| ||||||||||| |
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| T |
19421588 |
aaatttgacatcaaaattcgccaacaacttagatggctaacacatttcaaatatg |
19421642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 275 - 321
Target Start/End: Original strand, 27675770 - 27675816
Alignment:
| Q |
275 |
tgacatacaaatttgacatcaaaattcgacaacaacttagatagtta |
321 |
Q |
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| T |
27675770 |
tgacatacaaatttgacatcaatattccacatcaacttagatagtta |
27675816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 281 - 323
Target Start/End: Complemental strand, 25312605 - 25312563
Alignment:
| Q |
281 |
acaaatttgacatcaaaattcgacaacaacttagatagttaac |
323 |
Q |
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| T |
25312605 |
acaaatttgacatcaaaatttgacaacaatttagattgttaac |
25312563 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 281 - 309
Target Start/End: Original strand, 31352789 - 31352817
Alignment:
| Q |
281 |
acaaatttgacatcaaaattcgacaacaa |
309 |
Q |
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| T |
31352789 |
acaaatttgacatcaaaattcgacaacaa |
31352817 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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