View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9366_high_34 (Length: 366)

Name: NF9366_high_34
Description: NF9366
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9366_high_34
NF9366_high_34
[»] chr2 (7 HSPs)
chr2 (1-349)||(11917553-11917901)
chr2 (5-293)||(11933728-11934016)
chr2 (5-293)||(11946949-11947237)
chr2 (98-177)||(8338655-8338734)
chr2 (102-180)||(11834989-11835067)
chr2 (102-180)||(11821297-11821375)
chr2 (102-144)||(35538966-35539008)
[»] chr4 (10 HSPs)
chr4 (98-177)||(36108030-36108109)
chr4 (98-158)||(21482762-21482822)
chr4 (98-177)||(34971536-34971615)
chr4 (98-177)||(36100771-36100850)
chr4 (98-177)||(36090226-36090305)
chr4 (96-179)||(38090772-38090855)
chr4 (98-153)||(36080166-36080221)
chr4 (53-156)||(38125563-38125666)
chr4 (98-150)||(38145731-38145783)
chr4 (86-156)||(38081941-38082011)
[»] chr6 (1 HSPs)
chr6 (98-177)||(6838791-6838870)
[»] chr3 (3 HSPs)
chr3 (98-144)||(2152495-2152541)
chr3 (98-144)||(2176154-2176200)
chr3 (102-144)||(2196698-2196740)


Alignment Details
Target: chr2 (Bit Score: 329; Significance: 0; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 1 - 349
Target Start/End: Original strand, 11917553 - 11917901
Alignment:
Q  1 tgttagtggtgctggttatggtaacttgatgagaaaatatggtacttcaaccgataatgttattgacgctgaaataatcgattctaaaggtagattgctt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| ||||||||||||||||||    
T  11917553 tgttagtggtgctggttatggtaacttgatgagaaaatatggtacttcaaccgataatgttttggacgctgaaataatcgactctaaaggtagattgctt 11917652  T
Q  101 gatagaaaatcaatgggagaagatcttttttgggctataagaggtggtggtggagctaactttggtgttgttctttcttacaaaatcaagttagttaaag 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11917653 gatagaaaatcaatgggagaagatcttttttgggctataagaggtggtggtggagctaactttggtgttgttctttcttacaaaatcaagttagttaaag 11917752  T
Q  201 ttcctaagatagtaactgtttttgaagttaaaagaactttggaacaaaatgcaagtgacatagtttataattggcaacatgtagcaccaactacaagcaa 300  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11917753 ttcctaagatagtaactgtttttgaagttcaaagaactttggaacaaaatgcaagtgacatagtttataattggcaacatgtagcaccaactacaagcaa 11917852  T
Q  301 tgatcttttcattaggcttatattggaggttgtaaaagatacaaaaaat 349  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||    
T  11917853 tgatcttttcattaggcttatattggaggttgtaaaagatgcaaaaaat 11917901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 5 - 293
Target Start/End: Original strand, 11933728 - 11934016
Alignment:
Q  5 agtggtgctggttatggtaacttgatgagaaaatatggtacttcaaccgataatgttattgacgctgaaataatcgattctaaaggtagattgcttgata 104  Q
    ||||||| ||| ||||||||| |||||||||||||||||  ||||   |||||| |||| || ||  |||||||||||  ||| ||||||||||||||||    
T  11933728 agtggtggtggatatggtaacatgatgagaaaatatggtctttcagttgataatattatcgatgcacaaataatcgatgttaatggtagattgcttgata 11933827  T
Q  105 gaaaatcaatgggagaagatcttttttgggctataagaggtggtggtggagctaactttggtgttgttctttcttacaaaatcaagttagttaaagttcc 204  Q
    |||||||||||||||||||||||||||||||||| | ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  11933828 gaaaatcaatgggagaagatcttttttgggctattaaaggtggtggtggagctagctttggtgttgttctttcttacaaaatcaagttagttaaagttcc 11933927  T
Q  205 taagatagtaactgtttttgaagttaaaagaactttggaacaaaatgcaagtgacatagtttataattggcaacatgtagcaccaacta 293  Q
    ||| ||||||||||||||| || ||| || ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  11933928 taaaatagtaactgtttttcaaattagaaaaactttggaccaaaatgcaagtgacatagtttataattggcaacatgtagcaccaacta 11934016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 5 - 293
Target Start/End: Original strand, 11946949 - 11947237
Alignment:
Q  5 agtggtgctggttatggtaacttgatgagaaaatatggtacttcaaccgataatgttattgacgctgaaataatcgattctaaaggtagattgcttgata 104  Q
    ||||||| ||| ||||||||| |||||||||||||||||  ||||   |||||| |||| || ||  |||||||||||  ||| ||||||||||||||||    
T  11946949 agtggtggtggatatggtaacatgatgagaaaatatggtctttcagttgataatattatcgatgcacaaataatcgatgttaatggtagattgcttgata 11947048  T
Q  105 gaaaatcaatgggagaagatcttttttgggctataagaggtggtggtggagctaactttggtgttgttctttcttacaaaatcaagttagttaaagttcc 204  Q
    |||||||||||||||||||||||||||||||||| | ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||     
T  11947049 gaaaatcaatgggagaagatcttttttgggctattaaaggtggtggtggagctagctttggtgttgttctttcttacaaaatcaagttagttaaagttca 11947148  T
Q  205 taagatagtaactgtttttgaagttaaaagaactttggaacaaaatgcaagtgacatagtttataattggcaacatgtagcaccaacta 293  Q
    ||| ||||||||||||||| || ||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11947149 taaaatagtaactgtttttcaaattagaaaaactttggaacaaaatgcaagtgacatagtttataattggcaacatgtagcaccaacta 11947237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 98 - 177
Target Start/End: Original strand, 8338655 - 8338734
Alignment:
Q  98 cttgatagaaaatcaatgggagaagatcttttttgggctataagaggtggtggtggagctaactttggtgttgttctttc 177  Q
    ||||||||||||||||||||||||||||| ||||||||||| || ||||||||||| ||||  ||||||||| |||||||    
T  8338655 cttgatagaaaatcaatgggagaagatctgttttgggctattaggggtggtggtggtgctagttttggtgttattctttc 8338734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 102 - 180
Target Start/End: Complemental strand, 11835067 - 11834989
Alignment:
Q  102 atagaaaatcaatgggagaagatcttttttgggctataagaggtggtggtggagctaactttggtgttgttctttctta 180  Q
    |||| ||||||||||| ||||||||||||||||||||| |||| |||||||| ||||  |||||||||||||| |||||    
T  11835067 ataggaaatcaatgggtgaagatcttttttgggctatacgaggcggtggtggtgctagttttggtgttgttctgtctta 11834989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 102 - 180
Target Start/End: Original strand, 11821297 - 11821375
Alignment:
Q  102 atagaaaatcaatgggagaagatcttttttgggctataagaggtggtggtggagctaactttggtgttgttctttctta 180  Q
    |||| ||||||||||| |||||||||||||||||||||  |||||||||||| ||||  || ||||||||||| |||||    
T  11821297 ataggaaatcaatgggtgaagatcttttttgggctatactaggtggtggtggtgctagtttcggtgttgttctgtctta 11821375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 102 - 144
Target Start/End: Original strand, 35538966 - 35539008
Alignment:
Q  102 atagaaaatcaatgggagaagatcttttttgggctataagagg 144  Q
    ||||||||||||||||||||||| |||||||||| ||||||||    
T  35538966 atagaaaatcaatgggagaagatattttttgggccataagagg 35539008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 64; Significance: 7e-28; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 98 - 177
Target Start/End: Original strand, 36108030 - 36108109
Alignment:
Q  98 cttgatagaaaatcaatgggagaagatcttttttgggctataagaggtggtggtggagctaactttggtgttgttctttc 177  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||  ||||||||| |||||||    
T  36108030 cttgatagaaaatcaatgggagaagatcttttttgggctataagaggtggtggtggtgctagttttggtgttattctttc 36108109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 98 - 158
Target Start/End: Original strand, 21482762 - 21482822
Alignment:
Q  98 cttgatagaaaatcaatgggagaagatcttttttgggctataagaggtggtggtggagcta 158  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  21482762 cttgatagaaaatcaatgggagaagatcttttttgggctataagaggtggtggtggtgcta 21482822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 98 - 177
Target Start/End: Complemental strand, 34971615 - 34971536
Alignment:
Q  98 cttgatagaaaatcaatgggagaagatcttttttgggctataagaggtggtggtggagctaactttggtgttgttctttc 177  Q
    ||||||||||| ||||||||||||||||| ||||||||||| |||||||||||||| ||||  ||||||||| |||||||    
T  34971615 cttgatagaaagtcaatgggagaagatctcttttgggctatcagaggtggtggtggtgctagttttggtgttattctttc 34971536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 98 - 177
Target Start/End: Original strand, 36100771 - 36100850
Alignment:
Q  98 cttgatagaaaatcaatgggagaagatcttttttgggctataagaggtggtggtggagctaactttggtgttgttctttc 177  Q
    ||||||||||| ||||||||||||||||| |||||||||||||| ||||||||||| ||||  ||||||||| |||||||    
T  36100771 cttgatagaaagtcaatgggagaagatctattttgggctataaggggtggtggtggtgctagttttggtgttattctttc 36100850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 98 - 177
Target Start/End: Complemental strand, 36090305 - 36090226
Alignment:
Q  98 cttgatagaaaatcaatgggagaagatcttttttgggctataagaggtggtggtggagctaactttggtgttgttctttc 177  Q
    |||||||||| |||||| | | |||||||||||||||||||||||||||||||||| ||||  ||||||||| |||||||    
T  36090305 cttgatagaagatcaatagaaaaagatcttttttgggctataagaggtggtggtggggctagttttggtgttattctttc 36090226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 96 - 179
Target Start/End: Original strand, 38090772 - 38090855
Alignment:
Q  96 tgcttgatagaaaatcaatgggagaagatcttttttgggctataagaggtggtggtggagctaactttggtgttgttctttctt 179  Q
    ||||||||||  |||||||||| |||||| ||||||||||||| |||||||||||||||||||  ||||||||| || ||||||    
T  38090772 tgcttgatagggaatcaatgggggaagatgttttttgggctattagaggtggtggtggagctagttttggtgttattgtttctt 38090855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 98 - 153
Target Start/End: Original strand, 36080166 - 36080221
Alignment:
Q  98 cttgatagaaaatcaatgggagaagatcttttttgggctataagaggtggtggtgg 153  Q
    ||||||||||||||||||||||||||| | |||||||||||||| |||||||||||    
T  36080166 cttgatagaaaatcaatgggagaagatttattttgggctataaggggtggtggtgg 36080221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 53 - 156
Target Start/End: Original strand, 38125563 - 38125666
Alignment:
Q  53 gataatgttattgacgctgaaataatcgattctaaaggtagattgcttgatagaaaatcaatgggagaagatcttttttgggctataagaggtggtggtg 152  Q
    ||||||||| |||| ||||||||  | |||  ||| |||||  | |||||||| ||||||||||| ||||| |||||||||||||| ||||| ||||| |    
T  38125563 gataatgttgttgatgctgaaattgttgatgttaatggtaggattcttgataggaaatcaatgggtgaagaacttttttgggctattagaggaggtggag 38125662  T
Q  153 gagc 156  Q
    ||||    
T  38125663 gagc 38125666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 98 - 150
Target Start/End: Original strand, 38145731 - 38145783
Alignment:
Q  98 cttgatagaaaatcaatgggagaagatcttttttgggctataagaggtggtgg 150  Q
    ||||| |||||| | |||||||| ||||| |||||||||||||||||||||||    
T  38145731 cttgacagaaaagccatgggagaggatctattttgggctataagaggtggtgg 38145783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 86 - 156
Target Start/End: Original strand, 38081941 - 38082011
Alignment:
Q  86 aaaggtagattgcttgatagaaaatcaatgggagaagatcttttttgggctataagaggtggtggtggagc 156  Q
    |||||||| || ||||| ||| || ||||||| ||||||  |||||||||||| ||||||||||| |||||    
T  38081941 aaaggtaggttacttgacagagaagcaatgggtgaagattatttttgggctattagaggtggtggaggagc 38082011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 98 - 177
Target Start/End: Original strand, 6838791 - 6838870
Alignment:
Q  98 cttgatagaaaatcaatgggagaagatcttttttgggctataagaggtggtggtggagctaactttggtgttgttctttc 177  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||  ||||||||| |||||||    
T  6838791 cttgatagaaaatcaatgggagaagatcttttttgggccataagaggtggtggtggtgctagttttggtgttattctttc 6838870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 98 - 144
Target Start/End: Original strand, 2152495 - 2152541
Alignment:
Q  98 cttgatagaaaatcaatgggagaagatcttttttgggctataagagg 144  Q
    ||||||||||||||||||||||||||| ||||||||||||| |||||    
T  2152495 cttgatagaaaatcaatgggagaagatgttttttgggctattagagg 2152541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 98 - 144
Target Start/End: Original strand, 2176154 - 2176200
Alignment:
Q  98 cttgatagaaaatcaatgggagaagatcttttttgggctataagagg 144  Q
    ||||||||||||||||||||||||||| ||||||||||||| |||||    
T  2176154 cttgatagaaaatcaatgggagaagatgttttttgggctattagagg 2176200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 102 - 144
Target Start/End: Original strand, 2196698 - 2196740
Alignment:
Q  102 atagaaaatcaatgggagaagatcttttttgggctataagagg 144  Q
    ||||||||||||||||||||||| |||||||||| || |||||    
T  2196698 atagaaaatcaatgggagaagatgttttttgggccattagagg 2196740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University