View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9366_high_43 (Length: 330)
Name: NF9366_high_43
Description: NF9366
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9366_high_43 |
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Alignment Details
Target: chr5 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 4 - 322
Target Start/End: Complemental strand, 42356820 - 42356502
Alignment:
| Q |
4 |
gcaacaaagttttatcactaaaattaacacaattaatcattttcataagagttatgcacaataaatgagacgaaggtaggtaannnnnnncttacaggga |
103 |
Q |
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| T |
42356820 |
gcaacaaagttttaacactaaaattaacacaattaatcattttcataagagttatgcacaataaatgagacgaaggtaggtaatttttttcttacaggga |
42356721 |
T |
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| Q |
104 |
tcaagtttagaagagacttaatgaacaaatagaggtctacaaaaataagtttaaaacaattttttgcactttaccgcttgtattctggtgactgctgata |
203 |
Q |
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| T |
42356720 |
tcaagtttagaagagacttaatgaacaaatagaggtctacaaaaataagtttaaaacaaatttttgcactttaccgcttgtattctggtgactgctgata |
42356621 |
T |
|
| Q |
204 |
tttttcaaactcctgcaaccatgcttcatctgtcaaaggcgggaactcacctgtgaatttccaatcagtcattgaaagaccggatctagtgagtctggtt |
303 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42356620 |
tttttcaaactcctgcaaccatgcttcatctgtcaaaggagggaactcacccgtgaatttccaatcagtcattgaaagaccggatctagtgagtctggtt |
42356521 |
T |
|
| Q |
304 |
aaacccccaagtaccacca |
322 |
Q |
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| T |
42356520 |
aaacccccaagtaccacca |
42356502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 109; Significance: 8e-55; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 164 - 316
Target Start/End: Complemental strand, 43770447 - 43770295
Alignment:
| Q |
164 |
tttttgcactttaccgcttgtattctggtgactgctgatatttttcaaactcctgcaaccatgcttcatctgtcaaaggcgggaactcacctgtgaattt |
263 |
Q |
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||||||||||||||||||||||||| || |||||||||||||| |||||||| |||||||| || ||||| | |||||| ||||||||||| |||||||| |
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| T |
43770447 |
tttttgcactttaccgcttgtattcaggcgactgctgatatttctcaaactcttgcaaccacgcctcatcagacaaaggagggaactcacccgtgaattt |
43770348 |
T |
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| Q |
264 |
ccaatcagtcattgaaagaccggatctagtgagtctggttaaacccccaagta |
316 |
Q |
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| T |
43770347 |
ccaatcagtcattgaaagaccagatctagtgagtctggttaaacccccaagta |
43770295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 47
Target Start/End: Original strand, 39329094 - 39329128
Alignment:
| Q |
13 |
ttttatcactaaaattaacacaattaatcattttc |
47 |
Q |
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|||||||| |||||||||||||||||||||||||| |
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| T |
39329094 |
ttttatcattaaaattaacacaattaatcattttc |
39329128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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