View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9366_high_45 (Length: 324)
Name: NF9366_high_45
Description: NF9366
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9366_high_45 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 295; Significance: 1e-166; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 16 - 314
Target Start/End: Original strand, 35383379 - 35383677
Alignment:
| Q |
16 |
caaaaggctcctgtatcccttcctatggatacctttaagagccatgttctgaaggagcctattggtgttgttgcattaattactccatggtatctgcttt |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35383379 |
caaaaggctcctgtatcccttcctatggatacctttaagagccatgttctgaaggagcctattggtgttgttgcattaattactccatggtatctgcttt |
35383478 |
T |
|
| Q |
116 |
tttcttcaacttgttgtttatgaattcttttgcaatgaaactatctggtttgatgatctatttggtagactcattaaatgatgtaactgattttattata |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35383479 |
tttcttcaacttgttgtttatgaattctttttcaatgaaactatctggtttgatgatctatttggtagactcattaaatgatgtaactgattttattata |
35383578 |
T |
|
| Q |
216 |
tataggaactatcctctcttaatggcgacttggaaaattgctccagctctggctgctggttgtgctgcaatattgaagccgtctgaattggcatctgtg |
314 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35383579 |
tataggaactatcctctcttaatggcgacttggaaaattgctccagctctggctgctggttgtgctgcaatattgaagccgtctgaattggcatctgtg |
35383677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 218 - 314
Target Start/End: Complemental strand, 35363367 - 35363271
Alignment:
| Q |
218 |
taggaactatcctctcttaatggcgacttggaaaattgctccagctctggctgctggttgtgctgcaatattgaagccgtctgaattggcatctgtg |
314 |
Q |
| |
|
||||||||||||||||| ||||||| | |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
35363367 |
taggaactatcctctctcaatggcggcaaggaaaattgctccagctctggctgctggttgtgctgcaatcttgaagccgtctgaattggcatctgtg |
35363271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 16 - 108
Target Start/End: Complemental strand, 35363524 - 35363432
Alignment:
| Q |
16 |
caaaaggctcctgtatcccttcctatggatacctttaagagccatgttctgaaggagcctattggtgttgttgcattaattactccatggtat |
108 |
Q |
| |
|
||||| |||||| |||| ||||||||| ||||||| || ||| ||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35363524 |
caaaaagctcctatatctcttcctatgaataccttcaaaagctatgttctcaaggagcctattggtgttgttgcattaattactccatggtat |
35363432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 218 - 311
Target Start/End: Original strand, 44178073 - 44178166
Alignment:
| Q |
218 |
taggaactatcctctcttaatggcgacttggaaaattgctccagctctggctgctggttgtgctgcaatattgaagccgtctgaattggcatct |
311 |
Q |
| |
|
||||||||||||| | || ||||| || ||||| ||||||| ||||| ||||||||||||||||| ||||||||||| ||||||||||||||| |
|
|
| T |
44178073 |
taggaactatcctatgttgatggctacgtggaaggttgctcctgctcttgctgctggttgtgctgcgatattgaagccatctgaattggcatct |
44178166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 16 - 108
Target Start/End: Original strand, 44177580 - 44177672
Alignment:
| Q |
16 |
caaaaggctcctgtatcccttcctatggatacctttaagagccatgttctgaaggagcctattggtgttgttgcattaattactccatggtat |
108 |
Q |
| |
|
||||||||||| || || ||||| |||||||| || | ||| |||||||| |||||||||||||||||||||| |||||| |||||||||||| |
|
|
| T |
44177580 |
caaaaggctccggtgtctcttccaatggatacattcaggagtcatgttcttaaggagcctattggtgttgttggattaataactccatggtat |
44177672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University