View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9366_high_47 (Length: 315)
Name: NF9366_high_47
Description: NF9366
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9366_high_47 |
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Alignment Details
Target: chr6 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 1 - 296
Target Start/End: Complemental strand, 10555003 - 10554708
Alignment:
| Q |
1 |
gatattgttgatgattattattattgtaaagacttgaagcggcacgtcgaagatcttcatcatccttactacaaagcacttgtgcatattgcattaggtt |
100 |
Q |
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| T |
10555003 |
gatattgttgatgattattattattgtaaagacttgaagcggcacgtcgaagatcttcatcatccttactacaaagcacttgtgcatattgcattaggtt |
10554904 |
T |
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| Q |
101 |
tgggaacacctcttctgatgacgacgacgaaggaaaaagaggcttcggtggagcaagctgcgaagaagaagaggaagaagatgaagcattattcttatta |
200 |
Q |
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| T |
10554903 |
tgggaacacctcttctgatgacaacgacgaaggaaaaagaggcttcggtggagcaagctgcgaagaagaagaggaagaagatgaagcattattcttatta |
10554804 |
T |
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| Q |
201 |
cgcggtggttttggatccgaaggcaaattagaaatgagttgagggaaattaagcttggctttgtttcctttgaatctcaatgcagcttcatcataa |
296 |
Q |
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| T |
10554803 |
cgcggtggttttggatccgaaggcaaattagaaatgagtcgagggaaattaagcttggctttgtttcctttgaatctcaatgcagcttcatcataa |
10554708 |
T |
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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 246 - 295
Target Start/End: Original strand, 45013885 - 45013934
Alignment:
| Q |
246 |
aaattaagcttggctttgtttcctttgaatctcaatgcagcttcatcata |
295 |
Q |
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||||| ||||| |||||| ||||||||||||| | ||||||||||||||| |
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| T |
45013885 |
aaattgagcttagctttgcttcctttgaatctgagtgcagcttcatcata |
45013934 |
T |
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