View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9366_high_50 (Length: 298)

Name: NF9366_high_50
Description: NF9366
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9366_high_50
NF9366_high_50
[»] chr6 (18 HSPs)
chr6 (1-283)||(7993854-7994136)
chr6 (1-283)||(6594275-6594560)
chr6 (178-283)||(6426656-6426761)
chr6 (170-259)||(6589164-6589253)
chr6 (9-94)||(6602885-6602970)
chr6 (198-283)||(7119302-7119387)
chr6 (198-283)||(7131780-7131865)
chr6 (178-283)||(8913834-8913938)
chr6 (179-283)||(6416111-6416215)
chr6 (11-51)||(6423594-6423634)
chr6 (1-61)||(7131984-7132044)
chr6 (1-61)||(10579427-10579487)
chr6 (240-282)||(6403006-6403048)
chr6 (241-283)||(14820838-14820880)
chr6 (242-283)||(6395009-6395050)
chr6 (13-89)||(6410345-6410421)
chr6 (11-67)||(6426854-6426910)
chr6 (187-227)||(9411556-9411596)
[»] chr1 (12 HSPs)
chr1 (1-227)||(33160708-33160934)
chr1 (134-207)||(29658767-29658840)
chr1 (134-227)||(29691282-29691375)
chr1 (134-227)||(29718794-29718887)
chr1 (170-272)||(19468340-19468442)
chr1 (129-227)||(30827311-30827409)
chr1 (1-61)||(29658625-29658685)
chr1 (1-61)||(29691140-29691200)
chr1 (1-61)||(29718652-29718712)
chr1 (125-219)||(9586848-9586942)
chr1 (175-219)||(9581280-9581324)
chr1 (9-61)||(19468185-19468237)
[»] chr3 (3 HSPs)
chr3 (178-283)||(51764289-51764394)
chr3 (178-283)||(13470581-13470686)
chr3 (178-282)||(51113630-51113734)
[»] chr4 (2 HSPs)
chr4 (7-141)||(547203-547337)
chr4 (175-213)||(55908571-55908609)
[»] chr2 (1 HSPs)
chr2 (175-283)||(1037507-1037618)
[»] chr7 (4 HSPs)
chr7 (187-283)||(10614738-10614834)
chr7 (9-58)||(15091831-15091880)
chr7 (9-61)||(10169816-10169868)
chr7 (9-61)||(10177341-10177393)
[»] chr5 (1 HSPs)
chr5 (1-61)||(20477754-20477814)
[»] chr8 (1 HSPs)
chr8 (2-67)||(17627729-17627794)


Alignment Details
Target: chr6 (Bit Score: 275; Significance: 1e-154; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 1 - 283
Target Start/End: Original strand, 7993854 - 7994136
Alignment:
Q  1 agaatcagccttgttttcactcgttagaaactgtccatcacttcgtgaaatcaaaatggaacgcacaaatgttgggatagggagtgtagagaatttcaat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7993854 agaatcagccttgttttcactcgttagaaactgtccatcacttcgtgaaatcaaaatggaacgcacaaatgttgggatagggagtgtagagaatttcaat 7993953  T
Q  101 ttcttgatggattttcctccaagccctcaattgaagtctctttgtttagctctctgtcaacagttgagagatgcaaacatcatattgtttgctaccattt 200  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7993954 ttcttgacggattttcctccaagccctcaattgaagtctctttgtttagctctctgtcaacagttgagagatgcaaacatcatattgtttgctaccattt 7994053  T
Q  201 tccccaatttgcagatgctcgatttgaattcttgcaatggtatatctgaaggtatttgttacgttttaaggaaatgttgtaag 283  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7994054 tcccaaatttgcagatgctcgatttgaattcttgcaatggtatatctgaaggtatttgttacgttttaaggaaatgttgtaag 7994136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 1 - 283
Target Start/End: Original strand, 6594275 - 6594560
Alignment:
Q  1 agaatcagccttgttttcactcgttagaaactgtccatcacttcgtgaaatcaaaatggaacgcacaaatgttgggatagggagtgtagagaatttcaat 100  Q
    ||||||||| ||||||||||| |||||||  ||||| | |||| |||| ||||||||||| ||||||||| | ||||  | ||||| || || ||  |||    
T  6594275 agaatcagctttgttttcacttgttagaagttgtcctttacttagtgatatcaaaatggagcgcacaaatatcgggaaggagagtgcagtgagttctaat 6594374  T
Q  101 ttcttgatggattt---tcctccaagccctcaattgaagtctctttgtttagctctctgtcaacagttgagagatgcaaacatcatattgtttgctacca 197  Q
    |  |||| ||||||   |  |  || |||||||||||||||||||||||| |||| |||| | || |||| ||||| ||||||||||||||||||| | |    
T  6594375 tctttgagggatttcgttgttgtaaaccctcaattgaagtctctttgtttggctcgctgtgagcacttgaaagatgaaaacatcatattgtttgcttcta 6594474  T
Q  198 ttttccccaatttgcagatgctcgatttgaattcttgcaatggtatatctgaaggtatttgttacgttttaaggaaatgttgtaag 283  Q
    ||||||||| |||| || |||| |||||||  | || | ||   |||||||||||||||||| | |||||||||| ||||| ||||    
T  6594475 ttttccccactttggagctgcttgatttgaggttttccgatcaaatatctgaaggtatttgtcaagttttaaggagatgttataag 6594560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 178 - 283
Target Start/End: Complemental strand, 6426761 - 6426656
Alignment:
Q  178 catcatattgtttgctaccattttccccaatttgcagatgctcgatttgaattcttgcaatggtatatctgaaggtatttgttacgttttaaggaaatgt 277  Q
    ||||||| ||| |||| |||||||||||||||| ||| | || ||||||||   ||||  ||  |||||||||||||||||| | |||||||||||||||    
T  6426761 catcataatgtatgcttccattttccccaatttacagctacttgatttgaaggtttgccgtgaaatatctgaaggtatttgtgaagttttaaggaaatgt 6426662  T
Q  278 tgtaag 283  Q
    ||||||    
T  6426661 tgtaag 6426656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 170 - 259
Target Start/End: Original strand, 6589164 - 6589253
Alignment:
Q  170 gatgcaaacatcatattgtttgctaccattttccccaatttgcagatgctcgatttgaattcttgcaatggtatatctgaaggtatttgt 259  Q
    |||||||| |||||| |||||||| ||||||||||||||||  || |||| ||||| |||||||| |||   |||||| |||||||||||    
T  6589164 gatgcaaatatcataatgtttgcttccattttccccaatttagaggtgcttgatttcaattcttgtaataacatatctaaaggtatttgt 6589253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 9 - 94
Target Start/End: Original strand, 6602885 - 6602970
Alignment:
Q  9 ccttgttttcactcgttagaaactgtccatcacttcgtgaaatcaaaatggaacgcacaaatgttgggatagggagtgtagagaat 94  Q
    ||||||||||||| |||| ||||||||| |||||| |||| ||||||||||||  |||| || |||||| || || ||||||||||    
T  6602885 ccttgttttcacttgttaaaaactgtccttcacttagtgagatcaaaatggaagacacagatattgggaaagagaatgtagagaat 6602970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 198 - 283
Target Start/End: Complemental strand, 7119387 - 7119302
Alignment:
Q  198 ttttccccaatttgcagatgctcgatttgaattcttgcaatggtatatctgaaggtatttgttacgttttaaggaaatgttgtaag 283  Q
    ||||||||||||| ||  | || ||||||||| ||||||||   |||||||||||||||||| | |||||||||| ||||| ||||    
T  7119387 ttttccccaatttacaacttcttgatttgaatacttgcaataacatatctgaaggtatttgtcaagttttaaggagatgttctaag 7119302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 198 - 283
Target Start/End: Complemental strand, 7131865 - 7131780
Alignment:
Q  198 ttttccccaatttgcagatgctcgatttgaattcttgcaatggtatatctgaaggtatttgttacgttttaaggaaatgttgtaag 283  Q
    ||||||||||||| ||  | || ||||||||| ||||||||   |||||||||||||||||| | |||||||||| ||||| ||||    
T  7131865 ttttccccaatttacaacttcttgatttgaatacttgcaataacatatctgaaggtatttgtcaagttttaaggagatgttctaag 7131780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 178 - 283
Target Start/End: Original strand, 8913834 - 8913938
Alignment:
Q  178 catcatattgtttgctaccattttccccaatttgcagatgctcgatttgaattcttgcaatggtatatctgaaggtatttgttacgttttaaggaaatgt 277  Q
    ||||||| |||||||| |||||||  |||||||||| ||||| ||||| |||| |||  ||  ||||||| ||||||||||| | |||||||| | ||||    
T  8913834 catcataatgtttgcttccattttttccaatttgcatatgcttgattt-aattattgagattatatatctaaaggtatttgtcaagttttaagaagatgt 8913932  T
Q  278 tgtaag 283  Q
    ||||||    
T  8913933 tgtaag 8913938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 179 - 283
Target Start/End: Complemental strand, 6416215 - 6416111
Alignment:
Q  179 atcatattgtttgctaccattttccccaatttgcagatgctcgatttgaattcttgcaatggtatatctgaaggtatttgttacgttttaaggaaatgtt 278  Q
    |||||| ||||| || |||  ||||||||||||||| |||| |||||||||  ||| |||    ||||||||||||||||| | ||||||| || |||||    
T  6416215 atcataatgttttcttccaacttccccaatttgcagctgcttgatttgaatcgttgtaatctcttatctgaaggtatttgtcaagttttaaagatatgtt 6416116  T
Q  279 gtaag 283  Q
    |||||    
T  6416115 gtaag 6416111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 51
Target Start/End: Complemental strand, 6423634 - 6423594
Alignment:
Q  11 ttgttttcactcgttagaaactgtccatcacttcgtgaaat 51  Q
    |||||||||||||||||||||||||| |||||| |||||||    
T  6423634 ttgttttcactcgttagaaactgtccttcacttagtgaaat 6423594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 7132044 - 7131984
Alignment:
Q  1 agaatcagccttgttttcactcgttagaaactgtccatcacttcgtgaaatcaaaatggaa 61  Q
    ||||| |||||||| |||||||||||||||||| || |||||| ||||  |||||||||||    
T  7132044 agaattagccttgtattcactcgttagaaactgcccttcacttagtgagttcaaaatggaa 7131984  T

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Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 10579427 - 10579487
Alignment:
Q  1 agaatcagccttgttttcactcgttagaaactgtccatcacttcgtgaaatcaaaatggaa 61  Q
    |||||||||||||||||| ||||| ||||| ||||| || ||| |||| ||||||||||||    
T  10579427 agaatcagccttgttttccctcgtaagaaattgtccttcgcttagtgagatcaaaatggaa 10579487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 282
Target Start/End: Complemental strand, 6403048 - 6403006
Alignment:
Q  240 gtatatctgaaggtatttgttacgttttaaggaaatgttgtaa 282  Q
    |||||||||||||||||||| | |||||||||| |||||||||    
T  6403048 gtatatctgaaggtatttgtcaagttttaaggagatgttgtaa 6403006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 241 - 283
Target Start/End: Complemental strand, 14820880 - 14820838
Alignment:
Q  241 tatatctgaaggtatttgttacgttttaaggaaatgttgtaag 283  Q
    ||||||||||||||||||| | | |||||||||||||||||||    
T  14820880 tatatctgaaggtatttgtcaaggtttaaggaaatgttgtaag 14820838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 242 - 283
Target Start/End: Complemental strand, 6395050 - 6395009
Alignment:
Q  242 atatctgaaggtatttgttacgttttaaggaaatgttgtaag 283  Q
    |||||||||||||||||| | ||||||| |||||||||||||    
T  6395050 atatctgaaggtatttgtcaagttttaaagaaatgttgtaag 6395009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 89
Target Start/End: Complemental strand, 6410421 - 6410345
Alignment:
Q  13 gttttcactcgttagaaactgtccatcacttcgtgaaatcaaaatggaacgcacaaatgttgggatagggagtgtag 89  Q
    |||||||||||||||||| ||||| ||||||  ||| ||||||||| || | |||| | |||||| || ||||||||    
T  6410421 gttttcactcgttagaaattgtccttcacttaatgagatcaaaatgaaaagaacaagtattgggaaagagagtgtag 6410345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 67
Target Start/End: Complemental strand, 6426910 - 6426854
Alignment:
Q  11 ttgttttcactcgttagaaactgtccatcacttcgtgaaatcaaaatggaacgcaca 67  Q
    ||||||||||| |||||||||||||| ||| || |||| || ||||||||| |||||    
T  6426910 ttgttttcacttgttagaaactgtccttcaattagtgagattaaaatggaaggcaca 6426854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 187 - 227
Target Start/End: Complemental strand, 9411596 - 9411556
Alignment:
Q  187 gtttgctaccattttccccaatttgcagatgctcgatttga 227  Q
    ||||||| |||||||||||||||||||| |||| |||||||    
T  9411596 gtttgcttccattttccccaatttgcagctgcttgatttga 9411556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 59; Significance: 5e-25; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 33160934 - 33160708
Alignment:
Q  1 agaatcagccttgttttcactcgttagaaactgtccatcacttcgtgaaatcaaaatggaacgcacaaatgttgggatagggagtgtagagaatttcaat 100  Q
    ||||||||| ||||||||||| |||| ||||||||| |||||| |||| |||||||||||| |||||| | |||||| || |||| ||||| ||   |||    
T  33160934 agaatcagcattgttttcacttgttacaaactgtccttcacttagtgacatcaaaatggaatgcacaactattgggaaagagagtatagagcatgataat 33160835  T
Q  101 ttcttgatggattttcctccaagccctcaattgaagtctctttgtttagctctctgtcaacagttgagagatgcaaacatcatattgtttgctaccattt 200  Q
    |  |||| ||| |||     |||||||||||| |||||||||| ||| ||   |||||| || |||||||||| ||||||| |||||||| ||  ||| |    
T  33160834 tctttgacggactttgaagtaagccctcaattaaagtctctttctttggcggactgtcagcacttgagagatgaaaacatcgtattgtttcctttcatgt 33160735  T
Q  201 tccccaatttgcagatgctcgatttga 227  Q
    ||||||||||| || |||| |||||||    
T  33160734 tccccaatttggaggtgcttgatttga 33160708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 134 - 207
Target Start/End: Original strand, 29658767 - 29658840
Alignment:
Q  134 aagtctctttgtttagctctctgtcaacagttgagagatgcaaacatcatattgtttgctaccattttccccaa 207  Q
    |||||||||||||| |||| ||||||| | |||||||||  ||||||||||||||||||| |||||||||||||    
T  29658767 aagtctctttgtttggctcgctgtcaatacttgagagatcaaaacatcatattgtttgcttccattttccccaa 29658840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 134 - 227
Target Start/End: Original strand, 29691282 - 29691375
Alignment:
Q  134 aagtctctttgtttagctctctgtcaacagttgagagatgcaaacatcatattgtttgctaccattttccccaatttgcagatgctcgatttga 227  Q
    |||||||||||||| |||| ||||||| | |||||||||  |||||| |||||||||||| ||||||||||||| ||| || |||| |||||||    
T  29691282 aagtctctttgtttggctcgctgtcaatacttgagagatcaaaacattatattgtttgcttccattttccccaacttggaggtgcttgatttga 29691375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 134 - 227
Target Start/End: Original strand, 29718794 - 29718887
Alignment:
Q  134 aagtctctttgtttagctctctgtcaacagttgagagatgcaaacatcatattgtttgctaccattttccccaatttgcagatgctcgatttga 227  Q
    |||||||||||||| |||| ||||||| | |||||||||  |||||| |||||||||||| ||||||||||||| ||| || |||| |||||||    
T  29718794 aagtctctttgtttggctcgctgtcaatacttgagagatcaaaacattatattgtttgcttccattttccccaacttggaggtgcttgatttga 29718887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 170 - 272
Target Start/End: Original strand, 19468340 - 19468442
Alignment:
Q  170 gatgcaaacatcatattgtttgctaccattttccccaatttgcagatgctcgatttgaattcttgcaatggtatatctgaaggtatttgttacgttttaa 269  Q
    |||| |||||||||| |||||||| ||||||| |||||||||||| |||| |||||||| || |||||    ||||| ||||| |||||| | |||||||    
T  19468340 gatgaaaacatcataatgtttgcttccatttttcccaatttgcagctgcttgatttgaactcatgcaaccacatatcggaaggcatttgtcaagttttaa 19468439  T
Q  270 gga 272  Q
    |||    
T  19468440 gga 19468442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 129 - 227
Target Start/End: Complemental strand, 30827409 - 30827311
Alignment:
Q  129 aattgaagtctctttgtttagctctctgtcaacagttgagagatgcaaacatcatattgtttgctaccattttccccaatttgcagatgctcgatttga 227  Q
    |||| |||||||||| ||| |||  |||| || | |||||||||| ||||||| |||||||| || | ||||||||||||||| || |||| |||||||    
T  30827409 aattaaagtctctttctttggctggctgttaatacttgagagatgaaaacatcctattgtttacttctattttccccaatttggaggtgcttgatttga 30827311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 29658625 - 29658685
Alignment:
Q  1 agaatcagccttgttttcactcgttagaaactgtccatcacttcgtgaaatcaaaatggaa 61  Q
    ||||||||| |||||||| ||||||| ||| ||||| |||||| |||| ||||||||||||    
T  29658625 agaatcagctttgttttcgctcgttataaattgtccttcacttagtgacatcaaaatggaa 29658685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 29691140 - 29691200
Alignment:
Q  1 agaatcagccttgttttcactcgttagaaactgtccatcacttcgtgaaatcaaaatggaa 61  Q
    ||||||||| |||||||| ||||||| ||| ||||| |||||| |||| ||||||||||||    
T  29691140 agaatcagctttgttttcgctcgttataaattgtccttcacttagtgacatcaaaatggaa 29691200  T

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Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 29718652 - 29718712
Alignment:
Q  1 agaatcagccttgttttcactcgttagaaactgtccatcacttcgtgaaatcaaaatggaa 61  Q
    ||||||||| |||||||| ||||||| ||| ||||| |||||| |||| ||||||||||||    
T  29718652 agaatcagctttgttttcgctcgttataaattgtccttcacttagtgacatcaaaatggaa 29718712  T

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Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 125 - 219
Target Start/End: Complemental strand, 9586942 - 9586848
Alignment:
Q  125 cctcaattgaagtctctttgtttagctctctgtcaacagttgagagatgcaaacatcatattgtttgctaccattttccccaatttgcagatgct 219  Q
    ||||||||||||||||||  ||| | || |  ||||  ||| ||||||  |||||||||| |||||||| | |||||||||||||||||| ||||    
T  9586942 cctcaattgaagtctcttgatttgggtcgcaatcaatggttaagagataaaaacatcataatgtttgcttcaattttccccaatttgcagctgct 9586848  T

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Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 175 - 219
Target Start/End: Complemental strand, 9581324 - 9581280
Alignment:
Q  175 aaacatcatattgtttgctaccattttccccaatttgcagatgct 219  Q
    |||||||||| |||||||| | |||||||||||||||||| ||||    
T  9581324 aaacatcataatgtttgcttcaattttccccaatttgcagctgct 9581280  T

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Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 61
Target Start/End: Original strand, 19468185 - 19468237
Alignment:
Q  9 ccttgttttcactcgttagaaactgtccatcacttcgtgaaatcaaaatggaa 61  Q
    |||||||| |||||||||| || ||||| |||||| |||| ||||||||||||    
T  19468185 ccttgtttacactcgttaggaattgtccttcacttagtgagatcaaaatggaa 19468237  T

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Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 178 - 283
Target Start/End: Original strand, 51764289 - 51764394
Alignment:
Q  178 catcatattgtttgctaccattttccccaatttgcagatgctcgatttgaattcttgcaatggtatatctgaaggtatttgttacgttttaaggaaatgt 277  Q
    ||||||| |||||||| |||||||||||||||||||| |||| ||||| |||||||||||| | |||||| ||||| | ||| | |||||||||| ||||    
T  51764289 catcataatgtttgcttccattttccccaatttgcagctgcttgattttaattcttgcaatcgcatatctaaaggtgtctgtgaagttttaaggagatgt 51764388  T
Q  278 tgtaag 283  Q
    | ||||    
T  51764389 tctaag 51764394  T

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Target: chr3; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 178 - 283
Target Start/End: Original strand, 13470581 - 13470686
Alignment:
Q  178 catcatattgtttgctaccattttccccaatttgcagatgctcgatttgaattcttgcaatggtatatctgaaggtatttgttacgttttaaggaaatgt 277  Q
    ||||||| |||||||| ||| |||||||||||||||| |||| |||||||||| |||||||    ||||  ||||||||||| | |||||||||| ||||    
T  13470581 catcataatgtttgcttccaatttccccaatttgcagctgcttgatttgaattgttgcaatctcttatcaaaaggtatttgtcaagttttaaggatatgt 13470680  T
Q  278 tgtaag 283  Q
    ||||||    
T  13470681 tgtaag 13470686  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 178 - 282
Target Start/End: Original strand, 51113630 - 51113734
Alignment:
Q  178 catcatattgtttgctaccattttccccaatttgcagatgctcgatttgaattcttgcaatggtatatctgaaggtatttgttacgttttaaggaaatgt 277  Q
    ||||||| || ||||| |||||||||||||| ||||| | || ||||| | |  |||| |||  ||||| |||||||||||| | ||||||| || ||||    
T  51113630 catcataatgattgcttccattttccccaatctgcagcttcttgatttaactcattgctatgagatatccgaaggtatttgtcaagttttaaagagatgt 51113729  T
Q  278 tgtaa 282  Q
    |||||    
T  51113730 tgtaa 51113734  T

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Target: chr4 (Bit Score: 47; Significance: 7e-18; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 7 - 141
Target Start/End: Complemental strand, 547337 - 547203
Alignment:
Q  7 agccttgttttcactcgttagaaactgtccatcacttcgtgaaatcaaaatggaacgcacaaatgttgggatagggagtgtagagaatttcaatttcttg 106  Q
    |||||||||| |||||||||| || ||| | |||||| |||| ||||||||||||| ||||||  ||||||| | ||||||||||||||  ||||  ||     
T  547337 agccttgtttgcactcgttagtaattgtgcttcacttagtgagatcaaaatggaactcacaaaaattgggatggagagtgtagagaattctaattctttc 547238  T
Q  107 atggattttcctccaagccctcaattgaagtctct 141  Q
    | |||||||  |  |||||||||||||||||||||    
T  547237 aaggattttgttgtaagccctcaattgaagtctct 547203  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 175 - 213
Target Start/End: Original strand, 55908571 - 55908609
Alignment:
Q  175 aaacatcatattgtttgctaccattttccccaatttgca 213  Q
    ||||||||||||||||||| |||||||||||||||||||    
T  55908571 aaacatcatattgtttgcttccattttccccaatttgca 55908609  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 175 - 283
Target Start/End: Original strand, 1037507 - 1037618
Alignment:
Q  175 aaacatcatattgtttgctaccattttccccaatttgcagatgctcgatttgaattcttgcaatggtatatct---gaaggtatttgttacgttttaagg 271  Q
    ||||||||||||||||||| |||||||||||||||||||  | || |||||||  || ||| ||   ||||||   |||||||||||| | |||||||||    
T  1037507 aaacatcatattgtttgcttccattttccccaatttgcaatttcttgatttgagctcctgccataacatatctgaagaaggtatttgtgaagttttaagg 1037606  T
Q  272 aaatgttgtaag 283  Q
    | ||||||||||    
T  1037607 agatgttgtaag 1037618  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000007; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 187 - 283
Target Start/End: Complemental strand, 10614834 - 10614738
Alignment:
Q  187 gtttgctaccattttccccaatttgcagatgctcgatttgaattcttgcaatggtatatctgaaggtatttgttacgttttaaggaaatgttgtaag 283  Q
    ||||||| ||| |||||||||||||||  |||| |||||||||  |||||||    ||| ||||||||||||| | |||||||||| ||||||||||    
T  10614834 gtttgcttccaatttccccaatttgcaactgcttgatttgaatcgttgcaatctcttatatgaaggtatttgtcaagttttaaggatatgttgtaag 10614738  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 58
Target Start/End: Original strand, 15091831 - 15091880
Alignment:
Q  9 ccttgttttcactcgttagaaactgtccatcacttcgtgaaatcaaaatg 58  Q
    ||||||||||||||| |||||||||||| || |||  |||||||||||||    
T  15091831 ccttgttttcactcggtagaaactgtccttcgcttattgaaatcaaaatg 15091880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 61
Target Start/End: Original strand, 10169816 - 10169868
Alignment:
Q  9 ccttgttttcactcgttagaaactgtccatcacttcgtgaaatcaaaatggaa 61  Q
    |||||||| |||||||||| || ||||| |||||| |||| ||||||||||||    
T  10169816 ccttgtttgcactcgttaggaattgtccttcacttagtgagatcaaaatggaa 10169868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 61
Target Start/End: Original strand, 10177341 - 10177393
Alignment:
Q  9 ccttgttttcactcgttagaaactgtccatcacttcgtgaaatcaaaatggaa 61  Q
    |||||||| |||||||||| || ||||| |||||| |||| ||||||||||||    
T  10177341 ccttgtttgcactcgttaggaattgtccttcacttagtgagatcaaaatggaa 10177393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 20477754 - 20477814
Alignment:
Q  1 agaatcagccttgttttcactcgttagaaactgtccatcacttcgtgaaatcaaaatggaa 61  Q
    ||||| |||||||| |||||| |||||||||||||| |||||| |||| ||||||||||||    
T  20477754 agaattagccttgtattcactagttagaaactgtccttcactttgtgagatcaaaatggaa 20477814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 2 - 67
Target Start/End: Original strand, 17627729 - 17627794
Alignment:
Q  2 gaatcagccttgttttcactcgttagaaactgtccatcacttcgtgaaatcaaaatggaacgcaca 67  Q
    |||||||||||||||||||||||||| || ||||| ||||||  ||| || ||||||||| |||||    
T  17627729 gaatcagccttgttttcactcgttagtaaatgtccttcacttaatgagataaaaatggaatgcaca 17627794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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