View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9366_high_52 (Length: 297)
Name: NF9366_high_52
Description: NF9366
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9366_high_52 |
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Alignment Details
Target: chr5 (Bit Score: 250; Significance: 1e-139; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 7 - 296
Target Start/End: Complemental strand, 29305912 - 29305629
Alignment:
| Q |
7 |
tttggtggtagttacaagttcttgacaatgtttggcttcttttattgaattgtctggtccaaacaaagcataataacataagaggttggcacaaaggaat |
106 |
Q |
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| T |
29305912 |
tttggtggtagttacaagttcttgacaatgtttggcttcttttattgaattgtctggtccaa-caaagcataataacataagaggttggcacaaaggaat |
29305814 |
T |
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| Q |
107 |
agaactgtagcactttctggtgtctaaagtgaaatttttagtcacataataattgcatgatttttacttggtaattaccataatcattatataatatagg |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
29305813 |
agaactgtagcactttctggtgtctaaagtgaaatttttagtcacataataattgcatgatttttacttggtaattaccataatcattatatgatatagg |
29305714 |
T |
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| Q |
207 |
attcaaataacaaggttatttgactatattcaagcttcaaaaggcatggattgacatccacacacgggatggtatattagattatgattc |
296 |
Q |
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| T |
29305713 |
attcaaataacaaggttatttgactatattgaagcttcaaaaggcatgtattgacatccacacac-----ggtatattagattatgattc |
29305629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 39 - 189
Target Start/End: Complemental strand, 29297149 - 29297000
Alignment:
| Q |
39 |
tggcttcttttattgaattgtctggtccaaacaaagcataataacataagaggttggcacaaaggaatagaactgtagcactttctggtgtctaaagtga |
138 |
Q |
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|||| ||||||||| |||||| |||||| | |||||||| || |||||||||||||| |||||||||||||||| |||||||||||||| || ||||| |
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| T |
29297149 |
tggcatcttttattcaattgtatggtcccat-aaagcata-tagtataagaggttggcaaaaaggaatagaactgtggcactttctggtgtgtacagtga |
29297052 |
T |
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| Q |
139 |
aat-ttttagtcacataataattgcatgatttttacttggtaattaccataa |
189 |
Q |
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| T |
29297051 |
attattttaggcacataataattgcattatatttacttggtaattaccataa |
29297000 |
T |
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