View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9366_high_78 (Length: 246)
Name: NF9366_high_78
Description: NF9366
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9366_high_78 |
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Alignment Details
Target: chr3 (Bit Score: 160; Significance: 2e-85; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 8 - 228
Target Start/End: Original strand, 52132292 - 52132514
Alignment:
| Q |
8 |
ttggtgttatccttgagatatggaattaaatgagtaccaattaatgcacattggctaatggtaaatggtttcacgttgtgtgctttcccgtgttattata |
107 |
Q |
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| T |
52132292 |
ttggtgttatccttgagatatggaattaaatgagtaccagttaatacacattggctaatggtaaatggtttcacgttgtgtgctttccgatgttattata |
52132391 |
T |
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| Q |
108 |
aacgtttgcattgcctttgtttggac--gtctgtccagcatactgtcatatcattaattgaaattttttgttacctaagcagcactaatttgtattaatg |
205 |
Q |
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| T |
52132392 |
accatttgcattgccttggtttcgacgtgtctgtccagcttactgtcatatcattaattgaaattttttgttacctaagcagcattaatctgtattaatg |
52132491 |
T |
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| Q |
206 |
cagttactcctcagtttacatac |
228 |
Q |
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| T |
52132492 |
cagttattcctcagtttatatac |
52132514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 14 - 92
Target Start/End: Complemental strand, 39198676 - 39198594
Alignment:
| Q |
14 |
ttatccttgagatatggaattaaatgagtaccaattaa-----tgcacattggctaatggtaaatggtttcacgttgtgtgctt |
92 |
Q |
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| T |
39198676 |
ttatccttgagatatggaattaaatgagtaccaattaatacactacacattggctaatggtacatggttt-acgttgtgtgctt |
39198594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 8 - 46
Target Start/End: Original strand, 16864984 - 16865022
Alignment:
| Q |
8 |
ttggtgttatccttgagatatggaattaaatgagtacca |
46 |
Q |
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| T |
16864984 |
ttggtgttatctttgagatatggaattaaatgagtacca |
16865022 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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