View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9366_high_96 (Length: 227)

Name: NF9366_high_96
Description: NF9366
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9366_high_96
NF9366_high_96
[»] chr1 (13 HSPs)
chr1 (174-227)||(8338667-8338720)
chr1 (184-227)||(45115265-45115308)
chr1 (184-227)||(24981936-24981979)
chr1 (184-227)||(46906863-46906906)
chr1 (191-227)||(3549788-3549824)
chr1 (184-227)||(10832089-10832132)
chr1 (184-227)||(18353667-18353710)
chr1 (188-227)||(19175683-19175722)
chr1 (184-227)||(33939392-33939435)
chr1 (189-227)||(14967320-14967358)
chr1 (189-225)||(14885407-14885443)
chr1 (183-227)||(42761454-42761498)
chr1 (187-227)||(52923418-52923458)
[»] chr7 (19 HSPs)
chr7 (184-227)||(7701190-7701233)
chr7 (186-227)||(8447812-8447853)
chr7 (183-227)||(41872146-41872190)
chr7 (184-227)||(25245238-25245281)
chr7 (184-227)||(46022643-46022686)
chr7 (186-227)||(2943216-2943257)
chr7 (186-227)||(28306319-28306360)
chr7 (184-227)||(6455551-6455594)
chr7 (184-227)||(10095721-10095764)
chr7 (188-227)||(11002411-11002450)
chr7 (188-227)||(23818430-23818469)
chr7 (184-227)||(24935894-24935937)
chr7 (184-227)||(31813413-31813456)
chr7 (184-227)||(41404017-41404060)
chr7 (186-227)||(23797352-23797393)
chr7 (186-227)||(25768714-25768755)
chr7 (186-227)||(31115704-31115745)
chr7 (187-227)||(24280916-24280956)
chr7 (175-227)||(43813118-43813170)
[»] chr3 (18 HSPs)
chr3 (184-227)||(8504852-8504895)
chr3 (184-227)||(21217168-21217211)
chr3 (184-227)||(24075540-24075583)
chr3 (184-225)||(52215882-52215923)
chr3 (186-227)||(54595794-54595835)
chr3 (184-224)||(52215978-52216018)
chr3 (184-227)||(331893-331936)
chr3 (184-227)||(9170114-9170157)
chr3 (184-227)||(10872767-10872810)
chr3 (184-227)||(12744903-12744946)
chr3 (184-227)||(24075449-24075492)
chr3 (183-226)||(24694229-24694272)
chr3 (184-227)||(38677567-38677610)
chr3 (184-227)||(43818948-43818991)
chr3 (184-226)||(7882283-7882325)
chr3 (190-227)||(44382816-44382853)
chr3 (187-227)||(30519693-30519733)
chr3 (187-227)||(37897777-37897817)
[»] chr2 (24 HSPs)
chr2 (184-227)||(3098221-3098264)
chr2 (183-226)||(13333543-13333586)
chr2 (184-227)||(25270951-25270994)
chr2 (185-227)||(41056983-41057025)
chr2 (184-227)||(3121517-3121560)
chr2 (188-227)||(8740525-8740564)
chr2 (184-227)||(15119872-15119915)
chr2 (184-227)||(27331854-27331897)
chr2 (186-227)||(31024175-31024216)
chr2 (187-227)||(1961404-1961444)
chr2 (184-227)||(19612943-19612986)
chr2 (184-227)||(21183422-21183465)
chr2 (188-227)||(26003530-26003569)
chr2 (184-227)||(26234119-26234162)
chr2 (184-227)||(38465791-38465834)
chr2 (188-227)||(38465884-38465923)
chr2 (184-226)||(3121424-3121466)
chr2 (184-226)||(11342066-11342108)
chr2 (184-226)||(42530494-42530536)
chr2 (186-227)||(15119781-15119822)
chr2 (187-227)||(15859646-15859686)
chr2 (187-227)||(29819865-29819905)
chr2 (186-222)||(40874334-40874370)
chr2 (174-226)||(44587739-44587791)
[»] scaffold0009 (2 HSPs)
scaffold0009 (188-227)||(7752-7791)
scaffold0009 (184-227)||(145970-146013)
[»] chr8 (16 HSPs)
chr8 (184-227)||(10117065-10117108)
chr8 (184-227)||(10934698-10934741)
chr8 (184-227)||(27518410-27518453)
chr8 (183-227)||(11295665-11295709)
chr8 (184-227)||(1662672-1662715)
chr8 (184-227)||(13496530-13496573)
chr8 (184-227)||(23627668-23627711)
chr8 (184-227)||(24287787-24287830)
chr8 (184-227)||(31810336-31810379)
chr8 (184-227)||(31810429-31810472)
chr8 (184-227)||(33070260-33070303)
chr8 (184-227)||(41387857-41387900)
chr8 (186-227)||(7484712-7484753)
chr8 (191-227)||(2116656-2116692)
chr8 (187-227)||(13964424-13964464)
chr8 (186-226)||(25267979-25268019)
[»] chr6 (15 HSPs)
chr6 (184-227)||(16199122-16199165)
chr6 (187-226)||(28555043-28555082)
chr6 (185-227)||(13281537-13281579)
chr6 (186-227)||(34379830-34379871)
chr6 (183-226)||(12104746-12104789)
chr6 (184-227)||(12383684-12383727)
chr6 (184-227)||(14310616-14310659)
chr6 (184-227)||(31398321-31398364)
chr6 (184-226)||(6894816-6894858)
chr6 (189-227)||(12383882-12383920)
chr6 (184-226)||(18097062-18097104)
chr6 (184-226)||(31996595-31996637)
chr6 (186-227)||(31714539-31714580)
chr6 (187-227)||(14173395-14173435)
chr6 (187-227)||(14177931-14177971)
[»] chr5 (16 HSPs)
chr5 (184-227)||(71261-71304)
chr5 (184-227)||(18033450-18033493)
chr5 (177-227)||(5984078-5984128)
chr5 (184-226)||(10437733-10437775)
chr5 (184-227)||(5259480-5259523)
chr5 (184-227)||(11795738-11795781)
chr5 (184-227)||(14772550-14772593)
chr5 (184-227)||(15549420-15549463)
chr5 (184-227)||(17625643-17625685)
chr5 (184-227)||(26141757-26141800)
chr5 (185-226)||(26045315-26045356)
chr5 (174-227)||(29177806-29177859)
chr5 (191-224)||(37067863-37067896)
chr5 (180-221)||(37870118-37870159)
chr5 (187-227)||(14153374-14153414)
chr5 (187-227)||(28518723-28518763)
[»] chr4 (19 HSPs)
chr4 (184-227)||(14450959-14451002)
chr4 (184-227)||(39160909-39160952)
chr4 (184-227)||(47181561-47181604)
chr4 (184-227)||(54713100-54713143)
chr4 (184-227)||(56364421-56364464)
chr4 (184-226)||(38381978-38382020)
chr4 (187-227)||(34616220-34616260)
chr4 (184-227)||(29006837-29006880)
chr4 (184-227)||(36072572-36072615)
chr4 (184-227)||(48402506-48402549)
chr4 (184-227)||(49481882-49481925)
chr4 (184-227)||(52281120-52281163)
chr4 (184-227)||(54164908-54164951)
chr4 (184-227)||(56328545-56328588)
chr4 (184-222)||(484034-484072)
chr4 (166-227)||(5816634-5816695)
chr4 (186-227)||(55936082-55936123)
chr4 (179-227)||(18881439-18881487)
chr4 (187-227)||(27537061-27537101)
[»] scaffold1640 (1 HSPs)
scaffold1640 (186-227)||(1141-1182)


Alignment Details
Target: chr1 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 174 - 227
Target Start/End: Original strand, 8338667 - 8338720
Alignment:
Q  174 atatatacattccggtcactattataagcaaaaatctccattttagattcattc 227  Q
    ||||||||  ||||||||||||||||||||||||||| ||||||||||||||||    
T  8338667 atatataccctccggtcactattataagcaaaaatctacattttagattcattc 8338720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 184 - 227
Target Start/End: Complemental strand, 45115308 - 45115265
Alignment:
Q  184 tccggtcactattataagcaaaaatctccattttagattcattc 227  Q
    ||||||||||||||||||||||||||| ||||||||||||||||    
T  45115308 tccggtcactattataagcaaaaatctacattttagattcattc 45115265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 184 - 227
Target Start/End: Complemental strand, 24981979 - 24981936
Alignment:
Q  184 tccggtcactattataagcaaaaatctccattttagattcattc 227  Q
    ||||||||||||||||||||||||||  ||||||||||||||||    
T  24981979 tccggtcactattataagcaaaaatcaacattttagattcattc 24981936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 184 - 227
Target Start/End: Original strand, 46906863 - 46906906
Alignment:
Q  184 tccggtcactattataagcaaaaatctccattttagattcattc 227  Q
    |||||||||||||||||||||||||||  |||||||||||||||    
T  46906863 tccggtcactattataagcaaaaatctatattttagattcattc 46906906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 191 - 227
Target Start/End: Original strand, 3549788 - 3549824
Alignment:
Q  191 actattataagcaaaaatctccattttagattcattc 227  Q
    |||||||||||||||||||| ||||||||||||||||    
T  3549788 actattataagcaaaaatctacattttagattcattc 3549824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 184 - 227
Target Start/End: Complemental strand, 10832132 - 10832089
Alignment:
Q  184 tccggtcactattataagcaaaaatctccattttagattcattc 227  Q
    ||||||||||||||||| ||||||||| |||||||| |||||||    
T  10832132 tccggtcactattataaacaaaaatctacattttaggttcattc 10832089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 184 - 227
Target Start/End: Complemental strand, 18353710 - 18353667
Alignment:
Q  184 tccggtcactattataagcaaaaatctccattttagattcattc 227  Q
    ||||||||||||||||||||||||||   |||||||||||||||    
T  18353710 tccggtcactattataagcaaaaatcataattttagattcattc 18353667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 188 - 227
Target Start/End: Complemental strand, 19175722 - 19175683
Alignment:
Q  188 gtcactattataagcaaaaatctccattttagattcattc 227  Q
    ||||||||||||||||||||||| | ||||||||||||||    
T  19175722 gtcactattataagcaaaaatctactttttagattcattc 19175683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 184 - 227
Target Start/End: Complemental strand, 33939435 - 33939392
Alignment:
Q  184 tccggtcactattataagcaaaaatctccattttagattcattc 227  Q
    ||||||||||||||||||||||| | | ||||||||||||||||    
T  33939435 tccggtcactattataagcaaaagtttacattttagattcattc 33939392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 227
Target Start/End: Complemental strand, 14967358 - 14967320
Alignment:
Q  189 tcactattataagcaaaaatctccattttagattcattc 227  Q
    |||||||||||||||||||||  ||||||||||||||||    
T  14967358 tcactattataagcaaaaatcaacattttagattcattc 14967320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 189 - 225
Target Start/End: Complemental strand, 14885443 - 14885407
Alignment:
Q  189 tcactattataagcaaaaatctccattttagattcat 225  Q
    ||||||||||||||||||||||  |||||||||||||    
T  14885443 tcactattataagcaaaaatctaaattttagattcat 14885407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 227
Target Start/End: Original strand, 42761454 - 42761498
Alignment:
Q  183 ttccggtcactattataagcaaaaatctccattttagattcattc 227  Q
    ||||||||| |||||||||||||| | | ||||||||||||||||    
T  42761454 ttccggtcattattataagcaaaactttacattttagattcattc 42761498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 227
Target Start/End: Complemental strand, 52923458 - 52923418
Alignment:
Q  187 ggtcactattataagcaaaaatctccattttagattcattc 227  Q
    |||||||||||||||||||||||| | |||||| |||||||    
T  52923458 ggtcactattataagcaaaaatctactttttaggttcattc 52923418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 184 - 227
Target Start/End: Original strand, 7701190 - 7701233
Alignment:
Q  184 tccggtcactattataagcaaaaatctccattttagattcattc 227  Q
    ||||||||||||||||||||||||||| ||||||||||||||||    
T  7701190 tccggtcactattataagcaaaaatctacattttagattcattc 7701233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 186 - 227
Target Start/End: Complemental strand, 8447853 - 8447812
Alignment:
Q  186 cggtcactattataagcaaaaatctccattttagattcattc 227  Q
    ||||||||||||||||||||||||| ||||||||||||||||    
T  8447853 cggtcactattataagcaaaaatctacattttagattcattc 8447812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 183 - 227
Target Start/End: Complemental strand, 41872190 - 41872146
Alignment:
Q  183 ttccggtcactattataagcaaaaatctccattttagattcattc 227  Q
    |||||||||||| ||||||||||||||| ||||||||||||||||    
T  41872190 ttccggtcactaatataagcaaaaatctacattttagattcattc 41872146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 184 - 227
Target Start/End: Complemental strand, 25245281 - 25245238
Alignment:
Q  184 tccggtcactattataagcaaaaatctccattttagattcattc 227  Q
    ||||||||||||||||||||||||||  ||||||||||||||||    
T  25245281 tccggtcactattataagcaaaaatcaacattttagattcattc 25245238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 184 - 227
Target Start/End: Complemental strand, 46022686 - 46022643
Alignment:
Q  184 tccggtcactattataagcaaaaatctccattttagattcattc 227  Q
    |||||||||||||||||| |||||||| ||||||||||||||||    
T  46022686 tccggtcactattataagaaaaaatctacattttagattcattc 46022643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 186 - 227
Target Start/End: Original strand, 2943216 - 2943257
Alignment:
Q  186 cggtcactattataagcaaaaatctccattttagattcattc 227  Q
    ||||||||||||||||||||||||  ||||||||||||||||    
T  2943216 cggtcactattataagcaaaaatcaacattttagattcattc 2943257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 186 - 227
Target Start/End: Original strand, 28306319 - 28306360
Alignment:
Q  186 cggtcactattataagcaaaaatctccattttagattcattc 227  Q
    ||||||||||||||| ||||||||| ||||||||||||||||    
T  28306319 cggtcactattataaccaaaaatctacattttagattcattc 28306360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 184 - 227
Target Start/End: Original strand, 6455551 - 6455594
Alignment:
Q  184 tccggtcactattataagcaaaaatctccattttagattcattc 227  Q
    |||| |||||||||||||||||||| | ||||||||||||||||    
T  6455551 tccgatcactattataagcaaaaatttacattttagattcattc 6455594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 184 - 227
Target Start/End: Original strand, 10095721 - 10095764
Alignment:
Q  184 tccggtcactattataagcaaaaatctccattttagattcattc 227  Q
    |||||||||||||||||||||||||   ||||||||||||||||    
T  10095721 tccggtcactattataagcaaaaattaacattttagattcattc 10095764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 188 - 227
Target Start/End: Complemental strand, 11002450 - 11002411
Alignment:
Q  188 gtcactattataagcaaaaatctccattttagattcattc 227  Q
    |||||||||||||| |||||||| ||||||||||||||||    
T  11002450 gtcactattataagtaaaaatctacattttagattcattc 11002411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 188 - 227
Target Start/End: Original strand, 23818430 - 23818469
Alignment:
Q  188 gtcactattataagcaaaaatctccattttagattcattc 227  Q
    ||||||||||||||||||||||  ||||||||||||||||    
T  23818430 gtcactattataagcaaaaatcaacattttagattcattc 23818469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 184 - 227
Target Start/End: Original strand, 24935894 - 24935937
Alignment:
Q  184 tccggtcactattataagcaaaaatctccattttagattcattc 227  Q
    ||||||||||| ||||||||||||||| |||||||| |||||||    
T  24935894 tccggtcactaatataagcaaaaatctacattttaggttcattc 24935937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 184 - 227
Target Start/End: Original strand, 31813413 - 31813456
Alignment:
Q  184 tccggtcactattataagcaaaaatctccattttagattcattc 227  Q
    ||||||||||||||||| ||||||| | ||||||||||||||||    
T  31813413 tccggtcactattataaacaaaaatttacattttagattcattc 31813456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 184 - 227
Target Start/End: Original strand, 41404017 - 41404060
Alignment:
Q  184 tccggtcactattataagcaaaaatctccattttagattcattc 227  Q
    |||||||||||||||||||||||||   ||||||||||||||||    
T  41404017 tccggtcactattataagcaaaaattatcattttagattcattc 41404060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 186 - 227
Target Start/End: Original strand, 23797352 - 23797393
Alignment:
Q  186 cggtcactattataagcaaaaatctccattttagattcattc 227  Q
    ||||||||||||||||||||| | | ||||||||||||||||    
T  23797352 cggtcactattataagcaaaattttgcattttagattcattc 23797393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 186 - 227
Target Start/End: Complemental strand, 25768755 - 25768714
Alignment:
Q  186 cggtcactattataagcaaaaatctccattttagattcattc 227  Q
    |||||||||||||||||||||||   ||||||||||||||||    
T  25768755 cggtcactattataagcaaaaatacacattttagattcattc 25768714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 186 - 227
Target Start/End: Complemental strand, 31115745 - 31115704
Alignment:
Q  186 cggtcactattataagcaaaaatctccattttagattcattc 227  Q
    ||||||||||||||||||||||||  |||||||| |||||||    
T  31115745 cggtcactattataagcaaaaatcaacattttagcttcattc 31115704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 227
Target Start/End: Complemental strand, 24280956 - 24280916
Alignment:
Q  187 ggtcactattataagcaaaaatctccattttagattcattc 227  Q
    ||||||||||||||| |||||||| ||||||| ||||||||    
T  24280956 ggtcactattataagtaaaaatctacattttaaattcattc 24280916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 227
Target Start/End: Original strand, 43813118 - 43813170
Alignment:
Q  175 tatatacattccggtcactattataagcaaaaatctccattttagattcattc 227  Q
    |||||||  ||||||||||||||||||||||||| |   ||||||||||||||    
T  43813118 tatataccctccggtcactattataagcaaaaatttaatttttagattcattc 43813170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 184 - 227
Target Start/End: Original strand, 8504852 - 8504895
Alignment:
Q  184 tccggtcactattataagcaaaaatctccattttagattcattc 227  Q
    ||||||||||||||||||||||||||| ||||||||||||||||    
T  8504852 tccggtcactattataagcaaaaatctacattttagattcattc 8504895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 184 - 227
Target Start/End: Original strand, 21217168 - 21217211
Alignment:
Q  184 tccggtcactattataagcaaaaatctccattttagattcattc 227  Q
    ||||||||||||||||||||||||||| ||||||||||||||||    
T  21217168 tccggtcactattataagcaaaaatctacattttagattcattc 21217211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 184 - 227
Target Start/End: Complemental strand, 24075583 - 24075540
Alignment:
Q  184 tccggtcactattataagcaaaaatctccattttagattcattc 227  Q
    |||||| |||||||||||||||||||| ||||||||||||||||    
T  24075583 tccggtaactattataagcaaaaatctacattttagattcattc 24075540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 184 - 225
Target Start/End: Original strand, 52215882 - 52215923
Alignment:
Q  184 tccggtcactattataagcaaaaatctccattttagattcat 225  Q
    ||||||||||||||||||||||||| | ||||||||||||||    
T  52215882 tccggtcactattataagcaaaaatttacattttagattcat 52215923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 186 - 227
Target Start/End: Original strand, 54595794 - 54595835
Alignment:
Q  186 cggtcactattataagcaaaaatctccattttagattcattc 227  Q
    ||||||||||||||||||||||||  ||||||||||||||||    
T  54595794 cggtcactattataagcaaaaatcaacattttagattcattc 54595835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 184 - 224
Target Start/End: Complemental strand, 52216018 - 52215978
Alignment:
Q  184 tccggtcactattataagcaaaaatctccattttagattca 224  Q
    ||||||||||||||||||||||||||  |||||||||||||    
T  52216018 tccggtcactattataagcaaaaatcaacattttagattca 52215978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 184 - 227
Target Start/End: Complemental strand, 331936 - 331893
Alignment:
Q  184 tccggtcactattataagcaaaaatctccattttagattcattc 227  Q
    |||||||||||||||||||||||||   ||||||||||||||||    
T  331936 tccggtcactattataagcaaaaattaacattttagattcattc 331893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 184 - 227
Target Start/End: Original strand, 9170114 - 9170157
Alignment:
Q  184 tccggtcactattataagcaaaaatctccattttagattcattc 227  Q
    ||||||||||||||||||||||||  | ||||||||||||||||    
T  9170114 tccggtcactattataagcaaaaaattacattttagattcattc 9170157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 184 - 227
Target Start/End: Complemental strand, 10872810 - 10872767
Alignment:
Q  184 tccggtcactattataagcaaaaatctccattttagattcattc 227  Q
    ||||||||||||||||||||||||| |  |||||||||||||||    
T  10872810 tccggtcactattataagcaaaaatttatattttagattcattc 10872767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 184 - 227
Target Start/End: Original strand, 12744903 - 12744946
Alignment:
Q  184 tccggtcactattataagcaaaaatctccattttagattcattc 227  Q
    ||||||||||||||||||||||||  | ||||||||||||||||    
T  12744903 tccggtcactattataagcaaaaacttacattttagattcattc 12744946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 184 - 227
Target Start/End: Original strand, 24075449 - 24075492
Alignment:
Q  184 tccggtcactattataagcaaaaatctccattttagattcattc 227  Q
    |||||||||||||||||||||||| |  ||||||||||||||||    
T  24075449 tccggtcactattataagcaaaaaacaacattttagattcattc 24075492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 183 - 226
Target Start/End: Original strand, 24694229 - 24694272
Alignment:
Q  183 ttccggtcactattataagcaaaaatctccattttagattcatt 226  Q
    |||||||||||| ||||||||||||||  |||||||||||||||    
T  24694229 ttccggtcactactataagcaaaaatcaacattttagattcatt 24694272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 184 - 227
Target Start/End: Original strand, 38677567 - 38677610
Alignment:
Q  184 tccggtcactattataagcaaaaatctccattttagattcattc 227  Q
    ||||||||||||||||||||||| | | ||||||||||||||||    
T  38677567 tccggtcactattataagcaaaagtttacattttagattcattc 38677610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 184 - 227
Target Start/End: Complemental strand, 43818991 - 43818948
Alignment:
Q  184 tccggtcactattataagcaaaaatctccattttagattcattc 227  Q
    ||||||||||||||||||||||| | | ||||||||||||||||    
T  43818991 tccggtcactattataagcaaaactttgcattttagattcattc 43818948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 226
Target Start/End: Original strand, 7882283 - 7882325
Alignment:
Q  184 tccggtcactattataagcaaaaatctccattttagattcatt 226  Q
    |||||||||||||||||||||||||   |||||||||||||||    
T  7882283 tccggtcactattataagcaaaaattaacattttagattcatt 7882325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 190 - 227
Target Start/End: Original strand, 44382816 - 44382853
Alignment:
Q  190 cactattataagcaaaaatctccattttagattcattc 227  Q
    ||||||||||||||||||||| ||||| ||||||||||    
T  44382816 cactattataagcaaaaatctacatttaagattcattc 44382853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 227
Target Start/End: Complemental strand, 30519733 - 30519693
Alignment:
Q  187 ggtcactattataagcaaaaatctccattttagattcattc 227  Q
    ||||||||||||||||||||| |  ||||||||||||||||    
T  30519733 ggtcactattataagcaaaaaccaacattttagattcattc 30519693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 227
Target Start/End: Complemental strand, 37897817 - 37897777
Alignment:
Q  187 ggtcactattataagcaaaaatctccattttagattcattc 227  Q
    |||||||||||||||||||||||  ||||||| ||||||||    
T  37897817 ggtcactattataagcaaaaatcaacattttaaattcattc 37897777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 24)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 184 - 227
Target Start/End: Complemental strand, 3098264 - 3098221
Alignment:
Q  184 tccggtcactattataagcaaaaatctccattttagattcattc 227  Q
    ||||||||||||||||||||||||||| ||||||||||||||||    
T  3098264 tccggtcactattataagcaaaaatctacattttagattcattc 3098221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 183 - 226
Target Start/End: Complemental strand, 13333586 - 13333543
Alignment:
Q  183 ttccggtcactattataagcaaaaatctccattttagattcatt 226  Q
    |||||||||||||||||||||||||||| |||||||||||||||    
T  13333586 ttccggtcactattataagcaaaaatctacattttagattcatt 13333543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 184 - 227
Target Start/End: Complemental strand, 25270994 - 25270951
Alignment:
Q  184 tccggtcactattataagcaaaaatctccattttagattcattc 227  Q
    ||||||||||||||||||||||||||| ||||||||||||||||    
T  25270994 tccggtcactattataagcaaaaatctacattttagattcattc 25270951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 185 - 227
Target Start/End: Complemental strand, 41057025 - 41056983
Alignment:
Q  185 ccggtcactattataagcaaaaatctccattttagattcattc 227  Q
    |||||||||||||||||||||||||| ||||||||||||||||    
T  41057025 ccggtcactattataagcaaaaatctacattttagattcattc 41056983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 184 - 227
Target Start/End: Complemental strand, 3121560 - 3121517
Alignment:
Q  184 tccggtcactattataagcaaaaatctccattttagattcattc 227  Q
    ||||||||||||||||||||||||||| |||||||||| |||||    
T  3121560 tccggtcactattataagcaaaaatctacattttagatccattc 3121517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 188 - 227
Target Start/End: Original strand, 8740525 - 8740564
Alignment:
Q  188 gtcactattataagcaaaaatctccattttagattcattc 227  Q
    ||||||||||||||||||||||| ||||||||||||||||    
T  8740525 gtcactattataagcaaaaatctacattttagattcattc 8740564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 184 - 227
Target Start/End: Complemental strand, 15119915 - 15119872
Alignment:
Q  184 tccggtcactattataagcaaaaatctccattttagattcattc 227  Q
    ||||||||||||||||||||||||||| ||||||||||| ||||    
T  15119915 tccggtcactattataagcaaaaatctacattttagatttattc 15119872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 184 - 227
Target Start/End: Complemental strand, 27331897 - 27331854
Alignment:
Q  184 tccggtcactattataagcaaaaatctccattttagattcattc 227  Q
    ||||||||||||||||||||||||||  ||||||||||||||||    
T  27331897 tccggtcactattataagcaaaaatcaacattttagattcattc 27331854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 186 - 227
Target Start/End: Original strand, 31024175 - 31024216
Alignment:
Q  186 cggtcactattataagcaaaaatctccattttagattcattc 227  Q
    ||||||||||||||||||||||||  ||||||||||||||||    
T  31024175 cggtcactattataagcaaaaatcaacattttagattcattc 31024216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 187 - 227
Target Start/End: Complemental strand, 1961444 - 1961404
Alignment:
Q  187 ggtcactattataagcaaaaatctccattttagattcattc 227  Q
    |||||||||||||||||||||||  ||||||||||||||||    
T  1961444 ggtcactattataagcaaaaatcaacattttagattcattc 1961404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 184 - 227
Target Start/End: Original strand, 19612943 - 19612986
Alignment:
Q  184 tccggtcactattataagcaaaaatctccattttagattcattc 227  Q
    ||||||||||| |||||||||||||||  |||||||||||||||    
T  19612943 tccggtcactaatataagcaaaaatctatattttagattcattc 19612986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 184 - 227
Target Start/End: Complemental strand, 21183465 - 21183422
Alignment:
Q  184 tccggtcactattataagcaaaaatctccattttagattcattc 227  Q
    |||||||||| |||||||||||||||  ||||||||||||||||    
T  21183465 tccggtcactgttataagcaaaaatcaacattttagattcattc 21183422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 188 - 227
Target Start/End: Complemental strand, 26003569 - 26003530
Alignment:
Q  188 gtcactattataagcaaaaatctccattttagattcattc 227  Q
    |||||| |||||||||||||||| ||||||||||||||||    
T  26003569 gtcacttttataagcaaaaatctacattttagattcattc 26003530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 184 - 227
Target Start/End: Complemental strand, 26234162 - 26234119
Alignment:
Q  184 tccggtcactattataagcaaaaatctccattttagattcattc 227  Q
    ||||||||||||||||||||||| | | ||||||||||||||||    
T  26234162 tccggtcactattataagcaaaagtttacattttagattcattc 26234119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 184 - 227
Target Start/End: Original strand, 38465791 - 38465834
Alignment:
Q  184 tccggtcactattataagcaaaaatctccattttagattcattc 227  Q
    ||||||||||||||||||||||||||  ||||||||||| ||||    
T  38465791 tccggtcactattataagcaaaaatcaacattttagattaattc 38465834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 188 - 227
Target Start/End: Complemental strand, 38465923 - 38465884
Alignment:
Q  188 gtcactattataagcaaaaatctccattttagattcattc 227  Q
    ||||||||| ||||||||||||| ||||||||||||||||    
T  38465923 gtcactattgtaagcaaaaatctacattttagattcattc 38465884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 226
Target Start/End: Original strand, 3121424 - 3121466
Alignment:
Q  184 tccggtcactattataagcaaaaatctccattttagattcatt 226  Q
    ||||||||||||||||||||||||||   ||||||||||||||    
T  3121424 tccggtcactattataagcaaaaatcaatattttagattcatt 3121466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 226
Target Start/End: Complemental strand, 11342108 - 11342066
Alignment:
Q  184 tccggtcactattataagcaaaaatctccattttagattcatt 226  Q
    |||| ||||||||||||||||||||||  ||||||||||||||    
T  11342108 tccgatcactattataagcaaaaatctatattttagattcatt 11342066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 226
Target Start/End: Original strand, 42530494 - 42530536
Alignment:
Q  184 tccggtcactattataagcaaaaatctccattttagattcatt 226  Q
    |||||||||||||||||| |||||| | |||||||||||||||    
T  42530494 tccggtcactattataagtaaaaatttacattttagattcatt 42530536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 186 - 227
Target Start/End: Original strand, 15119781 - 15119822
Alignment:
Q  186 cggtcactattataagcaaaaatctccattttagattcattc 227  Q
    |||||||||||||||||||||||   ||||||||||||||||    
T  15119781 cggtcactattataagcaaaaattaacattttagattcattc 15119822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 227
Target Start/End: Complemental strand, 15859686 - 15859646
Alignment:
Q  187 ggtcactattataagcaaaaatctccattttagattcattc 227  Q
    ||||| ||||||||||||||||||  |||||||||||||||    
T  15859686 ggtcattattataagcaaaaatctatattttagattcattc 15859646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 227
Target Start/End: Complemental strand, 29819905 - 29819865
Alignment:
Q  187 ggtcactattataagcaaaaatctccattttagattcattc 227  Q
    ||||||||||||||||||||||||   ||||||||||||||    
T  29819905 ggtcactattataagcaaaaatctatgttttagattcattc 29819865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 222
Target Start/End: Complemental strand, 40874370 - 40874334
Alignment:
Q  186 cggtcactattataagcaaaaatctccattttagatt 222  Q
    |||||||||||||||||||||||| | ||||||||||    
T  40874370 cggtcactattataagcaaaaatcactattttagatt 40874334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 226
Target Start/End: Complemental strand, 44587791 - 44587739
Alignment:
Q  174 atatatacattccggtcactattataagcaaaaatctccattttagattcatt 226  Q
    ||||||| |||  ||||||||||||||||||||| || | |||||||||||||    
T  44587791 atatatatattaaggtcactattataagcaaaaaactactttttagattcatt 44587739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 188 - 227
Target Start/End: Complemental strand, 7791 - 7752
Alignment:
Q  188 gtcactattataagcaaaaatctccattttagattcattc 227  Q
    ||||||||||||||||||||||| ||||||||||||||||    
T  7791 gtcactattataagcaaaaatctacattttagattcattc 7752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 184 - 227
Target Start/End: Original strand, 145970 - 146013
Alignment:
Q  184 tccggtcactattataagcaaaaatctccattttagattcattc 227  Q
    ||||||||||||||||| ||||||||  ||||||||||||||||    
T  145970 tccggtcactattataaacaaaaatcatcattttagattcattc 146013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 184 - 227
Target Start/End: Complemental strand, 10117108 - 10117065
Alignment:
Q  184 tccggtcactattataagcaaaaatctccattttagattcattc 227  Q
    ||||||||||||||||||||||||| | ||||||||||||||||    
T  10117108 tccggtcactattataagcaaaaatttacattttagattcattc 10117065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 184 - 227
Target Start/End: Complemental strand, 10934741 - 10934698
Alignment:
Q  184 tccggtcactattataagcaaaaatctccattttagattcattc 227  Q
    ||||||||||||||||||||||||||  ||||||||||||||||    
T  10934741 tccggtcactattataagcaaaaatcaacattttagattcattc 10934698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 184 - 227
Target Start/End: Complemental strand, 27518453 - 27518410
Alignment:
Q  184 tccggtcactattataagcaaaaatctccattttagattcattc 227  Q
    ||||||||||||||||| ||||||||| ||||||||||||||||    
T  27518453 tccggtcactattataaacaaaaatctacattttagattcattc 27518410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 183 - 227
Target Start/End: Original strand, 11295665 - 11295709
Alignment:
Q  183 ttccggtcactattataagcaaaaatctccattttagattcattc 227  Q
    |||||||||||||||||||||||||||  |||||||||| |||||    
T  11295665 ttccggtcactattataagcaaaaatcaacattttagatacattc 11295709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 184 - 227
Target Start/End: Complemental strand, 1662715 - 1662672
Alignment:
Q  184 tccggtcactattataagcaaaaatctccattttagattcattc 227  Q
    |||||||||||| |||||||||||| | ||||||||||||||||    
T  1662715 tccggtcactataataagcaaaaatatacattttagattcattc 1662672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 184 - 227
Target Start/End: Complemental strand, 13496573 - 13496530
Alignment:
Q  184 tccggtcactattataagcaaaaatctccattttagattcattc 227  Q
    ||||||||||||||||||||||||| | ||||||| ||||||||    
T  13496573 tccggtcactattataagcaaaaatttacattttaaattcattc 13496530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 184 - 227
Target Start/End: Original strand, 23627668 - 23627711
Alignment:
Q  184 tccggtcactattataagcaaaaatctccattttagattcattc 227  Q
    |||||||||||||||||||||||||||  |||||||||| ||||    
T  23627668 tccggtcactattataagcaaaaatctgtattttagatttattc 23627711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 184 - 227
Target Start/End: Original strand, 24287787 - 24287830
Alignment:
Q  184 tccggtcactattataagcaaaaatctccattttagattcattc 227  Q
    ||||||||||||||||||||||| | | ||||||||||||||||    
T  24287787 tccggtcactattataagcaaaactttgcattttagattcattc 24287830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 184 - 227
Target Start/End: Original strand, 31810336 - 31810379
Alignment:
Q  184 tccggtcactattataagcaaaaatctccattttagattcattc 227  Q
    |||||||||||||||||||||||  || ||||||||||||||||    
T  31810336 tccggtcactattataagcaaaatgctacattttagattcattc 31810379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 184 - 227
Target Start/End: Complemental strand, 31810472 - 31810429
Alignment:
Q  184 tccggtcactattataagcaaaaatctccattttagattcattc 227  Q
    ||||||||||| |||||||||||| || ||||||||||||||||    
T  31810472 tccggtcactaatataagcaaaaaactacattttagattcattc 31810429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 184 - 227
Target Start/End: Complemental strand, 33070303 - 33070260
Alignment:
Q  184 tccggtcactattataagcaaaaatctccattttagattcattc 227  Q
    ||||||||||||||||||||||| | | ||||||||||||||||    
T  33070303 tccggtcactattataagcaaaattttgcattttagattcattc 33070260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 184 - 227
Target Start/End: Complemental strand, 41387900 - 41387857
Alignment:
Q  184 tccggtcactattataagcaaaaatctccattttagattcattc 227  Q
    |||||||||||||||||||||||| ||  |||||||||||||||    
T  41387900 tccggtcactattataagcaaaaaactatattttagattcattc 41387857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 186 - 227
Target Start/End: Complemental strand, 7484753 - 7484712
Alignment:
Q  186 cggtcactattataagcaaaaatctccattttagattcattc 227  Q
    |||||| |||||||||||||||||  ||||||||||||||||    
T  7484753 cggtcattattataagcaaaaatcaacattttagattcattc 7484712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 191 - 227
Target Start/End: Complemental strand, 2116692 - 2116656
Alignment:
Q  191 actattataagcaaaaatctccattttagattcattc 227  Q
    |||||||||||||||||||| | ||||||||||||||    
T  2116692 actattataagcaaaaatctacgttttagattcattc 2116656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 227
Target Start/End: Original strand, 13964424 - 13964464
Alignment:
Q  187 ggtcactattataagcaaaaatctccattttagattcattc 227  Q
    |||||||||||||||||||||||  ||||||| ||||||||    
T  13964424 ggtcactattataagcaaaaatcaacattttaaattcattc 13964464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 226
Target Start/End: Original strand, 25267979 - 25268019
Alignment:
Q  186 cggtcactattataagcaaaaatctccattttagattcatt 226  Q
    |||||| |||||||| ||||||||| |||||||||||||||    
T  25267979 cggtcattattataaacaaaaatctacattttagattcatt 25268019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 184 - 227
Target Start/End: Original strand, 16199122 - 16199165
Alignment:
Q  184 tccggtcactattataagcaaaaatctccattttagattcattc 227  Q
    ||||||||||||||||||||||||||| |||||||| |||||||    
T  16199122 tccggtcactattataagcaaaaatctacattttaggttcattc 16199165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 187 - 226
Target Start/End: Complemental strand, 28555082 - 28555043
Alignment:
Q  187 ggtcactattataagcaaaaatctccattttagattcatt 226  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  28555082 ggtcactattataagcaaaaatctacattttagattcatt 28555043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 185 - 227
Target Start/End: Original strand, 13281537 - 13281579
Alignment:
Q  185 ccggtcactattataagcaaaaatctccattttagattcattc 227  Q
    ||||||||||||||||||||||||||  |||||||||||||||    
T  13281537 ccggtcactattataagcaaaaatctagattttagattcattc 13281579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 186 - 227
Target Start/End: Complemental strand, 34379871 - 34379830
Alignment:
Q  186 cggtcactattataagcaaaaatctccattttagattcattc 227  Q
    ||||||||||||||||||||||||  ||||||||||||||||    
T  34379871 cggtcactattataagcaaaaatcaacattttagattcattc 34379830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 183 - 226
Target Start/End: Original strand, 12104746 - 12104789
Alignment:
Q  183 ttccggtcactattataagcaaaaatctccattttagattcatt 226  Q
    |||||||||||||||||||||||||||  ||||||| |||||||    
T  12104746 ttccggtcactattataagcaaaaatcaacattttaaattcatt 12104789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 184 - 227
Target Start/End: Complemental strand, 12383727 - 12383684
Alignment:
Q  184 tccggtcactattataagcaaaaatctccattttagattcattc 227  Q
    ||||||||||||||||| ||||||||| ||||||||||| ||||    
T  12383727 tccggtcactattataaacaaaaatctacattttagattaattc 12383684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 184 - 227
Target Start/End: Complemental strand, 14310659 - 14310616
Alignment:
Q  184 tccggtcactattataagcaaaaatctccattttagattcattc 227  Q
    ||||||||||| |||||||||||||||  |||||||||||||||    
T  14310659 tccggtcactaatataagcaaaaatctgtattttagattcattc 14310616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 184 - 227
Target Start/End: Complemental strand, 31398364 - 31398321
Alignment:
Q  184 tccggtcactattataagcaaaaatctccattttagattcattc 227  Q
    ||||||||||||||||||||||| | | ||||||||||||||||    
T  31398364 tccggtcactattataagcaaaagtttacattttagattcattc 31398321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 226
Target Start/End: Original strand, 6894816 - 6894858
Alignment:
Q  184 tccggtcactattataagcaaaaatctccattttagattcatt 226  Q
    ||||||||||||||||| ||||||| | |||||||||||||||    
T  6894816 tccggtcactattataaacaaaaatttacattttagattcatt 6894858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 227
Target Start/End: Complemental strand, 12383920 - 12383882
Alignment:
Q  189 tcactattataagcaaaaatctccattttagattcattc 227  Q
    |||||||||||||||||||||| ||||||||| ||||||    
T  12383920 tcactattataagcaaaaatctacattttagactcattc 12383882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 226
Target Start/End: Original strand, 18097062 - 18097104
Alignment:
Q  184 tccggtcactattataagcaaaaatctccattttagattcatt 226  Q
    ||||||||||||||||||||||| | | |||||||||||||||    
T  18097062 tccggtcactattataagcaaaagtttacattttagattcatt 18097104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 226
Target Start/End: Complemental strand, 31996637 - 31996595
Alignment:
Q  184 tccggtcactattataagcaaaaatctccattttagattcatt 226  Q
    ||||||||||||||||||||||||||  |||||||| ||||||    
T  31996637 tccggtcactattataagcaaaaatcaacattttaggttcatt 31996595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 186 - 227
Target Start/End: Original strand, 31714539 - 31714580
Alignment:
Q  186 cggtcactattataagcaaaaatctccattttagattcattc 227  Q
    ||||||||||||||||||||||||  |||||||| |||||||    
T  31714539 cggtcactattataagcaaaaatcaacattttagtttcattc 31714580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 227
Target Start/End: Original strand, 14173395 - 14173435
Alignment:
Q  187 ggtcactattataagcaaaaatctccattttagattcattc 227  Q
    ||||||||||||||||||||||||   ||||||||||||||    
T  14173395 ggtcactattataagcaaaaatctaatttttagattcattc 14173435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 227
Target Start/End: Original strand, 14177931 - 14177971
Alignment:
Q  187 ggtcactattataagcaaaaatctccattttagattcattc 227  Q
    ||||||||||||||||||||||||   ||||||||||||||    
T  14177931 ggtcactattataagcaaaaatctaatttttagattcattc 14177971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 184 - 227
Target Start/End: Original strand, 71261 - 71304
Alignment:
Q  184 tccggtcactattataagcaaaaatctccattttagattcattc 227  Q
    |||||||||||||||||||||||||||  |||||||||||||||    
T  71261 tccggtcactattataagcaaaaatctatattttagattcattc 71304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 184 - 227
Target Start/End: Complemental strand, 18033493 - 18033450
Alignment:
Q  184 tccggtcactattataagcaaaaatctccattttagattcattc 227  Q
    ||||||||||||||||||||||||||| ||||||||||| ||||    
T  18033493 tccggtcactattataagcaaaaatctacattttagatttattc 18033450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 177 - 227
Target Start/End: Complemental strand, 5984128 - 5984078
Alignment:
Q  177 tatacattccggtcactattataagcaaaaatctccattttagattcattc 227  Q
    ||||||||||||||| |||||||||||||| | | ||||||||||||||||    
T  5984128 tatacattccggtcattattataagcaaaactttgcattttagattcattc 5984078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 184 - 226
Target Start/End: Complemental strand, 10437775 - 10437733
Alignment:
Q  184 tccggtcactattataagcaaaaatctccattttagattcatt 226  Q
    ||||||||||||||||||||||||||  |||||||||||||||    
T  10437775 tccggtcactattataagcaaaaatcaacattttagattcatt 10437733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 184 - 227
Target Start/End: Complemental strand, 5259523 - 5259480
Alignment:
Q  184 tccggtcactattataagcaaaaatctccattttagattcattc 227  Q
    ||||||||||| |||||||||||| || ||||||||||||||||    
T  5259523 tccggtcactaatataagcaaaaaactacattttagattcattc 5259480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 184 - 227
Target Start/End: Original strand, 11795738 - 11795781
Alignment:
Q  184 tccggtcactattataagcaaaaatctccattttagattcattc 227  Q
    ||||||||||| ||||||||||||||  ||||||||||||||||    
T  11795738 tccggtcactaatataagcaaaaatcaacattttagattcattc 11795781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 184 - 227
Target Start/End: Original strand, 14772550 - 14772593
Alignment:
Q  184 tccggtcactattataagcaaaaatctccattttagattcattc 227  Q
    ||||||||||||||||||||||||||  |||||||| |||||||    
T  14772550 tccggtcactattataagcaaaaatcaacattttaggttcattc 14772593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 184 - 227
Target Start/End: Complemental strand, 15549463 - 15549420
Alignment:
Q  184 tccggtcactattataagcaaaaatctccattttagattcattc 227  Q
    ||||||||||||||||| ||||||||  ||||||||||||||||    
T  15549463 tccggtcactattataaacaaaaatcaacattttagattcattc 15549420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 184 - 227
Target Start/End: Original strand, 17625643 - 17625685
Alignment:
Q  184 tccggtcactattataagcaaaaatctccattttagattcattc 227  Q
    |||||||||||||||||| |||||||| ||||||||||||||||    
T  17625643 tccggtcactattataag-aaaaatctacattttagattcattc 17625685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 184 - 227
Target Start/End: Original strand, 26141757 - 26141800
Alignment:
Q  184 tccggtcactattataagcaaaaatctccattttagattcattc 227  Q
    ||||||||||||||||||||||| | | ||||||||||||||||    
T  26141757 tccggtcactattataagcaaaagtttacattttagattcattc 26141800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 185 - 226
Target Start/End: Complemental strand, 26045356 - 26045315
Alignment:
Q  185 ccggtcactattataagcaaaaatctccattttagattcatt 226  Q
    |||||||||||||||| ||||||||  |||||||||||||||    
T  26045356 ccggtcactattataaacaaaaatcaacattttagattcatt 26045315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 174 - 227
Target Start/End: Complemental strand, 29177859 - 29177806
Alignment:
Q  174 atatatacattccggtcactattataagcaaaaatctccattttagattcattc 227  Q
    |||||||| ||||| ||||| |||||| ||||||| | ||||||||||||||||    
T  29177859 atatataccttccgttcactgttataaacaaaaatttacattttagattcattc 29177806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 191 - 224
Target Start/End: Complemental strand, 37067896 - 37067863
Alignment:
Q  191 actattataagcaaaaatctccattttagattca 224  Q
    |||||||||||||||||||| |||||||||||||    
T  37067896 actattataagcaaaaatctacattttagattca 37067863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 180 - 221
Target Start/End: Complemental strand, 37870159 - 37870118
Alignment:
Q  180 acattccggtcactattataagcaaaaatctccattttagat 221  Q
    ||||||||||||||| ||||||||||||||||  ||||||||    
T  37870159 acattccggtcactaatataagcaaaaatctcatttttagat 37870118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 227
Target Start/End: Original strand, 14153374 - 14153414
Alignment:
Q  187 ggtcactattataagcaaaaatctccattttagattcattc 227  Q
    |||||||||||||||||||||||| | ||||| ||||||||    
T  14153374 ggtcactattataagcaaaaatctactttttatattcattc 14153414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 227
Target Start/End: Original strand, 28518723 - 28518763
Alignment:
Q  187 ggtcactattataagcaaaaatctccattttagattcattc 227  Q
    |||||||||||||||||||||||  |||||| |||||||||    
T  28518723 ggtcactattataagcaaaaatcaacattttggattcattc 28518763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 184 - 227
Target Start/End: Original strand, 14450959 - 14451002
Alignment:
Q  184 tccggtcactattataagcaaaaatctccattttagattcattc 227  Q
    |||| |||||||||||||||||||||| ||||||||||||||||    
T  14450959 tccgatcactattataagcaaaaatctacattttagattcattc 14451002  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 184 - 227
Target Start/End: Complemental strand, 39160952 - 39160909
Alignment:
Q  184 tccggtcactattataagcaaaaatctccattttagattcattc 227  Q
    ||||||||||||||||| ||||||||| ||||||||||||||||    
T  39160952 tccggtcactattataaacaaaaatctacattttagattcattc 39160909  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 184 - 227
Target Start/End: Original strand, 47181561 - 47181604
Alignment:
Q  184 tccggtcactattataagcaaaaatctccattttagattcattc 227  Q
    ||||||||||||||||||||||||||| ||||||| ||||||||    
T  47181561 tccggtcactattataagcaaaaatctacattttaaattcattc 47181604  T

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Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 184 - 227
Target Start/End: Original strand, 54713100 - 54713143
Alignment:
Q  184 tccggtcactattataagcaaaaatctccattttagattcattc 227  Q
    ||||||||||||||||||||||||| | ||||||||||||||||    
T  54713100 tccggtcactattataagcaaaaatttacattttagattcattc 54713143  T

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Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 184 - 227
Target Start/End: Complemental strand, 56364464 - 56364421
Alignment:
Q  184 tccggtcactattataagcaaaaatctccattttagattcattc 227  Q
    |||||||||||||||||| |||||||| ||||||||||||||||    
T  56364464 tccggtcactattataagtaaaaatctacattttagattcattc 56364421  T

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Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 184 - 226
Target Start/End: Original strand, 38381978 - 38382020
Alignment:
Q  184 tccggtcactattataagcaaaaatctccattttagattcatt 226  Q
    ||||||||||||||||||||||||| | |||||||||||||||    
T  38381978 tccggtcactattataagcaaaaatttacattttagattcatt 38382020  T

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Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 187 - 227
Target Start/End: Original strand, 34616220 - 34616260
Alignment:
Q  187 ggtcactattataagcaaaaatctccattttagattcattc 227  Q
    |||||||||||||| ||||||||| ||||||||||||||||    
T  34616220 ggtcactattataaacaaaaatctacattttagattcattc 34616260  T

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Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 184 - 227
Target Start/End: Original strand, 29006837 - 29006880
Alignment:
Q  184 tccggtcactattataagcaaaaatctccattttagattcattc 227  Q
    |||||||||||||||||||||||||||   ||||||||||||||    
T  29006837 tccggtcactattataagcaaaaatctattttttagattcattc 29006880  T

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Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 184 - 227
Target Start/End: Original strand, 36072572 - 36072615
Alignment:
Q  184 tccggtcactattataagcaaaaatctccattttagattcattc 227  Q
    ||||||||||||||||||||||| | | ||||||||||||||||    
T  36072572 tccggtcactattataagcaaaattttgcattttagattcattc 36072615  T

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Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 184 - 227
Target Start/End: Complemental strand, 48402549 - 48402506
Alignment:
Q  184 tccggtcactattataagcaaaaatctccattttagattcattc 227  Q
    ||||| |||||||||||||||||||||  |||||||||||||||    
T  48402549 tccggccactattataagcaaaaatctatattttagattcattc 48402506  T

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Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 184 - 227
Target Start/End: Original strand, 49481882 - 49481925
Alignment:
Q  184 tccggtcactattataagcaaaaatctccattttagattcattc 227  Q
    ||||||||||||||||||||||| | | ||||||||||||||||    
T  49481882 tccggtcactattataagcaaaagtttacattttagattcattc 49481925  T

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Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 184 - 227
Target Start/End: Original strand, 52281120 - 52281163
Alignment:
Q  184 tccggtcactattataagcaaaaatctccattttagattcattc 227  Q
    ||||||||||||||||||||||||| | ||||||| ||||||||    
T  52281120 tccggtcactattataagcaaaaatatgcattttatattcattc 52281163  T

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Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 184 - 227
Target Start/End: Complemental strand, 54164951 - 54164908
Alignment:
Q  184 tccggtcactattataagcaaaaatctccattttagattcattc 227  Q
    |||||||||||||||||||||||||||   ||||||||||||||    
T  54164951 tccggtcactattataagcaaaaatctattttttagattcattc 54164908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 184 - 227
Target Start/End: Complemental strand, 56328588 - 56328545
Alignment:
Q  184 tccggtcactattataagcaaaaatctccattttagattcattc 227  Q
    ||||||||||| |||||||||||| || ||||||||||||||||    
T  56328588 tccggtcactaatataagcaaaaaactacattttagattcattc 56328545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 222
Target Start/End: Complemental strand, 484072 - 484034
Alignment:
Q  184 tccggtcactattataagcaaaaatctccattttagatt 222  Q
    ||||||||||||||||||||||||||  |||||||||||    
T  484072 tccggtcactattataagcaaaaatcaacattttagatt 484034  T

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Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 166 - 227
Target Start/End: Complemental strand, 5816695 - 5816634
Alignment:
Q  166 ctttaatcatatatacattccggtcactattataagcaaaaatctccattttagattcattc 227  Q
    ||||||||||||| ||  |||||||||||||||||  |||| | | ||||||||||||||||    
T  5816695 ctttaatcatatacactatccggtcactattataaataaaactttgcattttagattcattc 5816634  T

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Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 186 - 227
Target Start/End: Complemental strand, 55936123 - 55936082
Alignment:
Q  186 cggtcactattataagcaaaaatctccattttagattcattc 227  Q
    ||||||||||||||||||||||||   |||||||||||||||    
T  55936123 cggtcactattataagcaaaaatcaatattttagattcattc 55936082  T

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Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 227
Target Start/End: Complemental strand, 18881487 - 18881439
Alignment:
Q  179 tacattccggtcactattataagcaaaaatctccattttagattcattc 227  Q
    ||||||| | |||||||||||| ||||||| | ||||||||||||||||    
T  18881487 tacattctgatcactattataaccaaaaatatacattttagattcattc 18881439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 227
Target Start/End: Original strand, 27537061 - 27537101
Alignment:
Q  187 ggtcactattataagcaaaaatctccattttagattcattc 227  Q
    ||||| |||||||||||||||| | ||||||||||||||||    
T  27537061 ggtcattattataagcaaaaatttacattttagattcattc 27537101  T

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Target: scaffold1640 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold1640
Description:

Target: scaffold1640; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 186 - 227
Target Start/End: Original strand, 1141 - 1182
Alignment:
Q  186 cggtcactattataagcaaaaatctccattttagattcattc 227  Q
    |||||||||||||||||||||||   ||||||||||||||||    
T  1141 cggtcactattataagcaaaaatacacattttagattcattc 1182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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