View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9366_low_1 (Length: 835)

Name: NF9366_low_1
Description: NF9366
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9366_low_1
NF9366_low_1
[»] chr7 (4 HSPs)
chr7 (20-820)||(36126855-36127652)
chr7 (353-455)||(27571822-27571922)
chr7 (464-510)||(15050181-15050226)
chr7 (352-405)||(30182320-30182373)
[»] chr4 (4 HSPs)
chr4 (362-459)||(18596995-18597091)
chr4 (352-400)||(2206367-2206415)
chr4 (361-455)||(8330075-8330168)
chr4 (352-440)||(32818394-32818480)
[»] chr2 (1 HSPs)
chr2 (352-445)||(3476453-3476545)
[»] chr6 (3 HSPs)
chr6 (352-440)||(2234490-2234576)
chr6 (352-406)||(30926802-30926856)
chr6 (352-406)||(31305871-31305925)
[»] chr1 (2 HSPs)
chr1 (352-405)||(3515826-3515879)
chr1 (464-505)||(8130851-8130892)
[»] chr3 (2 HSPs)
chr3 (352-455)||(35058321-35058422)
chr3 (352-406)||(51285577-51285631)
[»] scaffold0361 (1 HSPs)
scaffold0361 (468-507)||(14268-14307)
[»] chr8 (2 HSPs)
chr8 (361-459)||(32056320-32056416)
chr8 (466-511)||(30251625-30251670)
[»] chr5 (2 HSPs)
chr5 (464-505)||(15368136-15368177)
chr5 (410-455)||(29922586-29922631)


Alignment Details
Target: chr7 (Bit Score: 692; Significance: 0; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 692; E-Value: 0
Query Start/End: Original strand, 20 - 820
Target Start/End: Complemental strand, 36127652 - 36126855
Alignment:
Q  20 gacaccaccaagtctccaccaaaatatccggcctccgtaaagaagatatccccgctcactaccgcctccgtgttgccggtaagcgcttccaaaaggattg 119  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  36127652 gacaccaccaagtctccaccaaaatatccggcctccgtaaagaagatatccccgctcactaccgcctccgtgttgccggtaaccgcttccaaaaggattg 36127553  T
Q  120 gaccgtgtcggaggtcgtcgactccgtcctctccctcactctccgtgacgacattgaaggcctgctcaatcgttggattggtcgattcgctcgcaagaat 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36127552 gaccgtgtcggaggtcgtcgactccgtcctctccctcactctccgtgacgacattgaaggcctgctcaatcgttggattggtcgattcgctcgcaagaat 36127453  T
Q  220 ttccctttcctcatcagagtatcgcacttttcctttctcttcactcttccatgactacaactacaaccttagtgcttgtttgattctgctttgacaaaaa 319  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36127452 ttccctttcctcatcagagtatcgcactttacctttctcttcactcttccatgactacaactacaaccttagtgcttgtttgattctgctttgacaaaaa 36127353  T
Q  320 ttgacagttgaaaataaagtgatttatggtagtttgagtgcaaaaatcaattctagaatgaaaatcttcaatttttagcttaaagttgggaatcaattct 419  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  36127352 ttgacagttgaaaataaagtgatttatggtagtttgagtgctaaaatcaattctagaatgaaaatcttcaatttttagcttaaagttaggaatcaattct 36127253  T
Q  420 tgatgcaaaatcaattttacttgagaccaatcaaacttgtttccagaatcaattttggctcttcctgaagtggaaccaaacatacacttagaagcttctg 519  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36127252 tgatgcaaaatcaattttacttgagaccaatcaaacttgtttccagaatcaattttggctcttcctgaagtggaaccaaacatacacttagaagcttctg 36127153  T
Q  520 actcaattttagcttaaacaataca--------------attgtattttcatatttgataggagttgacacaacgaggttcaattgaacactgtaactta 605  Q
    |||||||||||||||||||||||||              |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36127152 actcaattttagcttaaacaatacaattaatcattgtgcattgtattttcatatttgataggagttgacacaacgaggttcaattgaacactgtaactta 36127053  T
Q  606 gttttcagctggatgaagaatcagaaaaattattgtgccagaacagatatgtacaacatgatgattaggttgcatgctaggcataatagaacggatcagg 705  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  36127052 gttttcagctggatgaagaatcagaaaaattattgtgccagaacagatatatacaacatgatgattaggttgcatgctaggcataatagaacggatcagg 36126953  T
Q  706 cacgtggtttgttttttgagatgcaaaaatgcaggtatggtatgactggtgaaggttttagttttgcgaaggtttagttatttaatcgttgttagtaatt 805  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||                 |||||||||||||||||||||||||||||||||    
T  36126952 cacgtggtttgttttttgagatgcaaaaatgcaggtatggtatgactggt-----------------gaaggtttagttatttaatcgttgttagtaatt 36126870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 353 - 455
Target Start/End: Complemental strand, 27571922 - 27571822
Alignment:
Q  353 ttgagtgcaaaaatcaattctagaatgaaaatcttcaatttttagcttaaagttgggaatcaattcttgatgcaaaatcaattttacttgagaccaatca 452  Q
    |||||||  ||||||||||||||||| |||| || |||||| || ||| |||| |  ||||||||||||| | |||||||||| |||| |||| ||||||    
T  27571922 ttgagtgttaaaatcaattctagaatcaaaagctccaatttctaacttcaagtag--aatcaattcttgaggtaaaatcaattatactcgagagcaatca 27571825  T
Q  453 aac 455  Q
    |||    
T  27571824 aac 27571822  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 464 - 510
Target Start/End: Complemental strand, 15050226 - 15050181
Alignment:
Q  464 agaatcaattttggctcttcctgaagtggaaccaaacatacacttag 510  Q
    ||||||||||||||||| |||  ||||||||||||||||||||||||    
T  15050226 agaatcaattttggctcctcca-aagtggaaccaaacatacacttag 15050181  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 352 - 405
Target Start/End: Original strand, 30182320 - 30182373
Alignment:
Q  352 tttgagtgcaaaaatcaattctagaatgaaaatcttcaatttttagcttaaagt 405  Q
    |||||||| |||||| ||||||||||| |||| || ||||||||||||| ||||    
T  30182320 tttgagtgtaaaaattaattctagaatcaaaagctacaatttttagcttcaagt 30182373  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000005; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 362 - 459
Target Start/End: Complemental strand, 18597091 - 18596995
Alignment:
Q  362 aaaatcaattctagaatgaaaatcttcaatttttagcttaaagttgggaatcaattcttgatgcaaaatcaattttacttgagaccaatcaaacttgt 459  Q
    |||||||||| |||||| ||||  ||||| || |||||| ||||| | |||||||||| || | ||||||||||||||||||||  ||||||||||||    
T  18597091 aaaatcaattatagaatcaaaaggttcaaattatagcttcaagttag-aatcaattctggaggtaaaatcaattttacttgagagaaatcaaacttgt 18596995  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 352 - 400
Target Start/End: Original strand, 2206367 - 2206415
Alignment:
Q  352 tttgagtgcaaaaatcaattctagaatgaaaatcttcaatttttagctt 400  Q
    ||||||||||||||||||| ||||||| |||| || |||||||||||||    
T  2206367 tttgagtgcaaaaatcaatcctagaatcaaaagctccaatttttagctt 2206415  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 361 - 455
Target Start/End: Complemental strand, 8330168 - 8330075
Alignment:
Q  361 aaaaatcaattctagaatgaaaatcttcaatttttagcttaaagttgggaatcaattcttgatgcaaaatcaattttacttgagaccaatcaaac 455  Q
    ||||||||||| |||||| |||| || |||||| |||||| |||||  ||||| ||| | || ||| |||||||||||||||||| ||| |||||    
T  8330168 aaaaatcaattatagaatcaaaagctccaatttctagcttcaagtt-agaatccattatggaggcagaatcaattttacttgagagcaaccaaac 8330075  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 352 - 440
Target Start/End: Original strand, 32818394 - 32818480
Alignment:
Q  352 tttgagtgcaaaaatcaattctagaatgaaaatcttcaatttttagcttaaagttgggaatcaattcttgatgcaaaatcaattttact 440  Q
    |||| |||||||||||||||||||||| |||| || ||| || |||||| || |   ||||||||||| || |||||||||||| ||||    
T  32818394 tttgtgtgcaaaaatcaattctagaatcaaaagctacaaattctagcttcaaat--agaatcaattctggaggcaaaatcaattctact 32818480  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 352 - 445
Target Start/End: Original strand, 3476453 - 3476545
Alignment:
Q  352 tttgagtgcaaaaatcaattctagaatgaaaatcttcaatttttagcttaaagttgggaatcaattcttgatgcaaaatcaattttacttgaga 445  Q
    ||||| || |||||| ||||||||||| |||| ||  |||||||||||| ||||| | |||||||||| || ||||||||||||||||| ||||    
T  3476453 tttgaatgtaaaaataaattctagaatcaaaagctctaatttttagctttaagttag-aatcaattctggaggcaaaatcaattttactcgaga 3476545  T

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Target: chr6 (Bit Score: 34; Significance: 0.000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 352 - 440
Target Start/End: Complemental strand, 2234576 - 2234490
Alignment:
Q  352 tttgagtgcaaaaatcaattctagaatgaaaatcttcaatttttagcttaaagttgggaatcaattcttgatgcaaaatcaattttact 440  Q
    ||||||||  ||||||||||||||||| |||| ||||| |||||||||| |||||  ||||||||| |  | |||||||||||| ||||    
T  2234576 tttgagtgttaaaatcaattctagaatcaaaagcttcagtttttagcttcaagtt--gaatcaattttgaaggcaaaatcaattctact 2234490  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 352 - 406
Target Start/End: Original strand, 30926802 - 30926856
Alignment:
Q  352 tttgagtgcaaaaatcaattctagaatgaaaatcttcaatttttagcttaaagtt 406  Q
    |||||||| |||||||||||||||||| |||| || |||||| |||||| |||||    
T  30926802 tttgagtgtaaaaatcaattctagaataaaaaactccaatttctagcttcaagtt 30926856  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 352 - 406
Target Start/End: Original strand, 31305871 - 31305925
Alignment:
Q  352 tttgagtgcaaaaatcaattctagaatgaaaatcttcaatttttagcttaaagtt 406  Q
    |||||||| | |||||||||||||||| |||| || ||||||||||||| |||||    
T  31305871 tttgagtgtataaatcaattctagaatcaaaagctccaatttttagcttcaagtt 31305925  T

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Target: chr1 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 352 - 405
Target Start/End: Complemental strand, 3515879 - 3515826
Alignment:
Q  352 tttgagtgcaaaaatcaattctagaatgaaaatcttcaatttttagcttaaagt 405  Q
    |||||||| ||||||||||||||||||||||| || |||||| |||||| ||||    
T  3515879 tttgagtgtaaaaatcaattctagaatgaaaagctacaatttctagcttcaagt 3515826  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 464 - 505
Target Start/End: Complemental strand, 8130892 - 8130851
Alignment:
Q  464 agaatcaattttggctcttcctgaagtggaaccaaacataca 505  Q
    ||||||||||||||||| ||| ||||||||||||||||||||    
T  8130892 agaatcaattttggctcctccagaagtggaaccaaacataca 8130851  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000005; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 352 - 455
Target Start/End: Complemental strand, 35058422 - 35058321
Alignment:
Q  352 tttgagtgcaaaaatcaattctagaatgaaaatcttcaatttttagcttaaagttgggaatcaattcttgatgcaaaatcaattttacttgagaccaatc 451  Q
    ||||||||  ||||||||||||||||| |||| ||  ||||| |||||  |||| |  ||||||||||||| |||||||||||| |||| |||| | |||    
T  35058422 tttgagtgttaaaatcaattctagaatcaaaagctcgaatttctagctccaagtag--aatcaattcttgaggcaaaatcaattctactcgagagccatc 35058325  T
Q  452 aaac 455  Q
    ||||    
T  35058324 aaac 35058321  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 352 - 406
Target Start/End: Complemental strand, 51285631 - 51285577
Alignment:
Q  352 tttgagtgcaaaaatcaattctagaatgaaaatcttcaatttttagcttaaagtt 406  Q
    ||||||||||||||||||||||||||| |||| ||   ||||||||||| |||||    
T  51285631 tttgagtgcaaaaatcaattctagaatcaaaagctgtgatttttagcttcaagtt 51285577  T

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Target: scaffold0361 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0361
Description:

Target: scaffold0361; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 468 - 507
Target Start/End: Original strand, 14268 - 14307
Alignment:
Q  468 tcaattttggctcttcctgaagtggaaccaaacatacact 507  Q
    |||||||||||||||||  |||||||||||||||||||||    
T  14268 tcaattttggctcttccaaaagtggaaccaaacatacact 14307  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000008; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 361 - 459
Target Start/End: Complemental strand, 32056416 - 32056320
Alignment:
Q  361 aaaaatcaattctagaatgaaaatcttcaatttttagcttaaagttgggaatcaattcttgatgcaaaatcaattttacttgagaccaatcaaacttgt 459  Q
    |||||||||||||||||| | || || |||||| |||||||||||| | |||||||| | || | |||||||||||||||  ||| ||| |||||||||    
T  32056416 aaaaatcaattctagaat-agaagctccaatttctagcttaaagttag-aatcaattatggaggtaaaatcaattttactatagagcaaccaaacttgt 32056320  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 466 - 511
Target Start/End: Complemental strand, 30251670 - 30251625
Alignment:
Q  466 aatcaattttggctcttcctgaagtggaaccaaacatacacttaga 511  Q
    ||||||||||||||| |||  | |||||||||||||||||||||||    
T  30251670 aatcaattttggctcctccaaatgtggaaccaaacatacacttaga 30251625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 464 - 505
Target Start/End: Complemental strand, 15368177 - 15368136
Alignment:
Q  464 agaatcaattttggctcttcctgaagtggaaccaaacataca 505  Q
    ||||||||||||||||| |||  |||||||||||||||||||    
T  15368177 agaatcaattttggctcctccaaaagtggaaccaaacataca 15368136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 410 - 455
Target Start/End: Complemental strand, 29922631 - 29922586
Alignment:
Q  410 aatcaattcttgatgcaaaatcaattttacttgagaccaatcaaac 455  Q
    ||||||||||||| |||||||||||| |||| |||| |||||||||    
T  29922631 aatcaattcttgaggcaaaatcaattctactagagaacaatcaaac 29922586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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