View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9366_low_10 (Length: 538)
Name: NF9366_low_10
Description: NF9366
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9366_low_10 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 357; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 17 - 521
Target Start/End: Complemental strand, 50499380 - 50498881
Alignment:
| Q |
17 |
aaaataaaccttttgatatctctctcttcatccnnnnnnnnn--acaccatagtataggtattgaagtgaaaaccttgtgacttattttctaaggaaacc |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50499380 |
aaaataaaccttttgatatctctctcttcatccattttttttttacaccatagtataggtattgaagtgaaaaccttgtgacttattttctaaggaaacc |
50499281 |
T |
|
| Q |
115 |
cgataaacacaatgcactcttttctc--aattgaattttctccatacacaataatctgaccatttatttagatagttcaaatctcttaccacttatatat |
212 |
Q |
| |
|
|| | ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50499280 |
cgttgaacacaatgcactcttttctctcaattgaattttctccatacacaataatctgaccatttatttagatagttcaaatctcttaccacttatatat |
50499181 |
T |
|
| Q |
213 |
ttatcaattgttggcaaagtgaccctattatatgacaatagcattatataactttcggaacgtcaaactaaaacttgtgcggcaagtctatttatttgtt |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
50499180 |
ttatcaattgttggcaaagtgaccctattatatgacaatagcattatataactttcggaaagtcaaacgaaaacttgtgcggcaagtctatttatttgtt |
50499081 |
T |
|
| Q |
313 |
tgtgaaaataaaattcattcaataccatcaaaccccatgcacactcctcgttgctcattgaaaccctttcgctcattcctgtaactaaactaataatgga |
412 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50499080 |
tgtgaaaataaaattcattcaattccatcaaaccccatgcacactcctcgttgctcattgaaaccctttcgctcattcctgtaactaaactaataatgga |
50498981 |
T |
|
| Q |
413 |
atctagtcaatctaccaacaacaacaacaacnnnnnnnnngaatggaagagtttaagaagttgccggaagggtgcatcgccaccatatccacacgacccg |
512 |
Q |
| |
|
| ||||||||||| || || || ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50498980 |
a---------tctaccaacaaaaaaaaaaaaaaaaaaaaagaacagaagagtttaagaagttgccggaagggtgcatcgccaccatatccacacgacccg |
50498890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University