View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9366_low_108 (Length: 298)
Name: NF9366_low_108
Description: NF9366
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9366_low_108 |
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| [»] chr7 (5 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 217; Significance: 1e-119; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 9 - 298
Target Start/End: Original strand, 16022555 - 16022847
Alignment:
| Q |
9 |
tcgtgtttagaaggatatattttgtcattcaaaaagattagtgatgcaggttgttgtccgtttgtcttctattcttttataattaattttaaannnnnnn |
108 |
Q |
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| T |
16022555 |
tcgtgtttggaaggatagattttgtcattaaaaaagattagtgatgcaggttgttgtccgtttatcttctattcgtttataattaattttaaatatattt |
16022654 |
T |
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| Q |
109 |
nnn---cttgaaaaatagaaataacaagtatgtatttgaacttatctaaattaaattgcaacagaaattaatacccttgttttataacttctctctataa |
205 |
Q |
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| T |
16022655 |
ttttttcttgaaaaataaaaataacaagtatgtatttgaacttatctaaattaaattgcaacagaaattaatacccttgttttataacttctctatataa |
16022754 |
T |
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| Q |
206 |
atatatgaaacactgcatgaaaccaaagacatgtatcttagagtattcaccatatcaacatatcccgccatggtgttcctattttcaaacctt |
298 |
Q |
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| T |
16022755 |
atatatgaaacactgcatgaaaccaaacacatgtatcttagagtattcaccatatcaacatatcccgccatggtgttcctattttcaaacctt |
16022847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 9 - 249
Target Start/End: Original strand, 14602533 - 14602775
Alignment:
| Q |
9 |
tcgtgtttagaaggatatattttgtcattcaaaaagattagtgatgcaggttgttgtccgtttgtcttctattcttttataattaattttaaannnnnnn |
108 |
Q |
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| T |
14602533 |
tcgtgtttagaaggatatattttgtcattcaaaaagattagtgatgcaggttgttgtccgtttgtcttctattcttttataattaattttaaatattttt |
14602632 |
T |
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| Q |
109 |
nnn--cttgaaaaatagaaataacaagtatgtatttgaacttatctaaattaaattgcaacagaaattaatacccttgttttataacttctctctataaa |
206 |
Q |
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| T |
14602633 |
tttttcttgaaaaataaaaataacaagtatgtatttgaacttatctaaattaaattgcaacggaaattaatacccttgttttataacttctctctataaa |
14602732 |
T |
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| Q |
207 |
tatatgaaacactgcatgaaaccaaagacatgtatcttagagt |
249 |
Q |
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| T |
14602733 |
tatatgaaacactgcatgaaaccaaagacatgtatcttagagt |
14602775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 241 - 298
Target Start/End: Original strand, 14603319 - 14603376
Alignment:
| Q |
241 |
tcttagagtattcaccatatcaacatatcccgccatggtgttcctattttcaaacctt |
298 |
Q |
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| T |
14603319 |
tcttagagtattcaccatatcaacatatcccgccatggtgtttctattttcaaacctt |
14603376 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 178 - 226
Target Start/End: Original strand, 16100812 - 16100860
Alignment:
| Q |
178 |
acccttgttttataacttctctctataaatatatgaaacactgcatgaa |
226 |
Q |
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| T |
16100812 |
acccttgttttataacttctccctataaatatatgaaacactacatgaa |
16100860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 82
Target Start/End: Original strand, 45974760 - 45974832
Alignment:
| Q |
11 |
gtgtttagaaggatatattttgtcattcaaaaagat-tagtgatgcaggttgttgtccgtttgtcttctattc |
82 |
Q |
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| T |
45974760 |
gtgtttacaaggataaattttgtcatccaaaaaggtctagtggcgcagcttgttgtccgcttgtcttctattc |
45974832 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 51 - 95
Target Start/End: Complemental strand, 2601734 - 2601690
Alignment:
| Q |
51 |
gatgcaggttgttgtccgtttgtcttctattcttttataattaat |
95 |
Q |
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| T |
2601734 |
gatgcagcttgttgtccgtttgtcttctattcatgtgtaattaat |
2601690 |
T |
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