View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9366_low_117 (Length: 291)
Name: NF9366_low_117
Description: NF9366
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9366_low_117 |
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Alignment Details
Target: chr1 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 19 - 286
Target Start/End: Original strand, 34093435 - 34093680
Alignment:
| Q |
19 |
ctaacagataaccacaatggaagcagcagcattaccatcatgtcgacatgtaaaatcatagagtgaaaattttatcaaagatccttcaaatttttactac |
118 |
Q |
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| T |
34093435 |
ctaacagataaccacaatggaagca---gcattaccatcatgtcgacaagtaaaatcatagagtgaaaattttatcaaagatccttcaaatttttactac |
34093531 |
T |
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| Q |
119 |
catttattgcattaacatcatcacatcacatcacatcactagttaatttctagcaaggatttgttcagttagagcaggaagacttgaaaggcaagcataa |
218 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34093532 |
catttattgcattaacatcatcacatcacatc-------------------agcaaggatttgttcagttagagcaggaagacttgaaaggcaagcataa |
34093612 |
T |
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| Q |
219 |
ttagaagctcaagatccaagtgaggtgcaggctaatatcattacctttttctggttatctctgcttct |
286 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
34093613 |
ttagaagctcaagatccaagtgaggtgcaggctaatatcattacctttttctggttatctctgattct |
34093680 |
T |
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