View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9366_low_12 (Length: 519)
Name: NF9366_low_12
Description: NF9366
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9366_low_12 |
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Alignment Details
Target: chr6 (Bit Score: 412; Significance: 0; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 15 - 502
Target Start/End: Original strand, 1684214 - 1684712
Alignment:
| Q |
15 |
cagagattactccaataccattgctgatctgtagtagtcagtgaaaatgtacattaattaattaatatgggttaagtataaatcattcatccaattatta |
114 |
Q |
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| T |
1684214 |
cagagattactccaataccattgctgatctgcagtagtcagtgaaagtgta----tattaattaatatgggttaagtataaatcattcatccaattatta |
1684309 |
T |
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| Q |
115 |
actcacaagtcacaacaatactataggaatataaattaccagaacataaaggtcaaagggatggagcagagcatatgttgtccagcaaagtccattgagg |
214 |
Q |
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| T |
1684310 |
actcacaagtcacaacaatactataggaatataaattaccagaacataaaggtcaaagggatggagcagagcatatgttgtccagcaaagtccattgagg |
1684409 |
T |
|
| Q |
215 |
aagttaaacacagagagccagaatggcatgtatttcacactcttagtcgttataacctttttctgttgatcatatcatatgtaacaagtttagggaaaat |
314 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
1684410 |
aagttaaacacagagagccagaatggcatgtatttcacactcttagtcgttataacctttttctgttgatcatatcatatgtaacaagtttagagaaaat |
1684509 |
T |
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| Q |
315 |
actttataagatacagcataattcatatctgaatata---------------aagttacttaccatgattgtaagaggagaaatatacatcaatatgttg |
399 |
Q |
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| T |
1684510 |
actttataagatacagtataattcatatctgaatataaagttattggaatagaagttacttaccatgattgtaagaggagaaatatacatcaatatgttg |
1684609 |
T |
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| Q |
400 |
aagacatcacaaacaataccaacaattaaagacctgccggtagtgccatgaaataccaacattgttatcagaacaatggcagcaaagaaaatggcctcaa |
499 |
Q |
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| T |
1684610 |
aagacatcacaaacaataccaacaattaaagacctgccggtagtgccatgaaataccaacattgttatcagaacaatggcagcaaagaaaatagcctcaa |
1684709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 106 - 316
Target Start/End: Original strand, 1694736 - 1694941
Alignment:
| Q |
106 |
caattattaactcacaagtcacaacaatactataggaatataaattaccagaacataaaggtcaaagggatggagcagagcatatgttgtccagcaaagt |
205 |
Q |
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| T |
1694736 |
caattattaactcacaaatcacaacaatactataggaatataaattaccagaacataaatgtcaaaggggtggagcagagcatatgttgtccagcaaagt |
1694835 |
T |
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| Q |
206 |
ccattgaggaagttaaacacagagagccagaatggcatgtatttcacactcttagtcgttataacctttttctgttgatcatatcatatgtaacaagttt |
305 |
Q |
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| T |
1694836 |
ccattgaggaagttggtaagagagagccagaatggcatgtatttcacactcttggttcttataaccgttgcctgtt-----catcatatgtaacaagttt |
1694930 |
T |
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| Q |
306 |
agggaaaatac |
316 |
Q |
| |
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|| |||||||| |
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| T |
1694931 |
agagaaaatac |
1694941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 352 - 477
Target Start/End: Original strand, 1694985 - 1695110
Alignment:
| Q |
352 |
aagttacttaccatgattgtaagaggagaaatatacatcaatatgttgaagacatcacaaacaataccaacaattaaagacctgccggtagtgccatgaa |
451 |
Q |
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||||||||||||||||| |||||||||||| |||||||||||||||||||| |||||||| ||| ||||||||||||||||| |||||||||||| | |
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| T |
1694985 |
aagttacttaccatgatcgtaagaggagaagcatacatcaatatgttgaagatatcacaaataatcccaacaattaaagacctcttggtagtgccatgta |
1695084 |
T |
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| Q |
452 |
ataccaacattgttatcagaacaatg |
477 |
Q |
| |
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| T |
1695085 |
atgccaacattgttatcagaacaatg |
1695110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 357 - 497
Target Start/End: Original strand, 1700096 - 1700236
Alignment:
| Q |
357 |
acttaccatgattgtaagaggagaaatatacatcaatatgttgaagacatcacaaacaataccaacaattaaagacctgccggtagtgccatgaaatacc |
456 |
Q |
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|||||||||||||||||||||||| |||||||| | |||||||||||||| | || |||||||||||| || || |||||||||||| | || |
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| T |
1700096 |
acttaccatgattgtaagaggagatgcatacatcatgacattgaagacatcacatagaacaccaacaattaacgatctttttttagtgccatgaagtgcc |
1700195 |
T |
|
| Q |
457 |
aacattgttatcagaacaatggcagcaaagaaaatggcctc |
497 |
Q |
| |
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| T |
1700196 |
aacattgttattagaacaatgacagcaaagaaaatagcctc |
1700236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 182 - 273
Target Start/End: Original strand, 1699904 - 1699995
Alignment:
| Q |
182 |
agagcatatgttgtccagcaaagtccattgaggaagttaaacacagagagccagaatggcatgtatttcacactcttagtcgttataacctt |
273 |
Q |
| |
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|||||||||||||||||||| | |||||||||||||| | ||||||||| ||||||||||||||||||||||| || |||||||||| |
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| T |
1699904 |
agagcatatgttgtccagcacaaaccattgaggaagttggttagagagagccaaaatggcatgtatttcacactcttggtttttataacctt |
1699995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 148 - 281
Target Start/End: Original strand, 1674181 - 1674314
Alignment:
| Q |
148 |
aattaccagaacataaaggtcaaagggatggagcagagcatatgttgtccagcaaagtccattgaggaagttaaacacagagagccagaatggcatgtat |
247 |
Q |
| |
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||||||||| | ||||| ||| ||||| | || ||||||||||||||||| || | |||||| || ||| || || |||| || |||||||||||||| |
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| T |
1674181 |
aattaccaggagataaatgtcgaaggggttgatgagagcatatgttgtccaacacaatccattaagaaagatagccagagagggcaagaatggcatgtat |
1674280 |
T |
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| Q |
248 |
ttcacactcttagtcgttataacctttttctgtt |
281 |
Q |
| |
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||||||||||| || ||||||| |||| ||||| |
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| T |
1674281 |
ttcacactctttgtttttataacattttcctgtt |
1674314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 15 - 98
Target Start/End: Original strand, 1694635 - 1694713
Alignment:
| Q |
15 |
cagagattactccaataccattgctgatctgtagtagtcagtgaaaatgtacattaattaattaatatgggttaagtataaatc |
98 |
Q |
| |
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|||||||||||||||||||||| |||||||| | || ||||| |||||||| |||||| || |||||||||||||||||| |
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| T |
1694635 |
cagagattactccaataccattactgatctgcaataatcagtaaaaatgtatattaat-----aacatgggttaagtataaatc |
1694713 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 352 - 412
Target Start/End: Original strand, 1971025 - 1971085
Alignment:
| Q |
352 |
aagttacttaccatgattgtaagaggagaaatatacatcaatatgttgaagacatcacaaa |
412 |
Q |
| |
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||||||||||||| ||| ||||||||||| | ||||||||||||| ||||| |||||||| |
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|
| T |
1971025 |
aagttacttaccacgatggtaagaggagagacatacatcaatatggggaagatatcacaaa |
1971085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 351 - 403
Target Start/End: Complemental strand, 43151628 - 43151576
Alignment:
| Q |
351 |
aaagttacttaccatgattgtaagaggagaaatatacatcaatatgttgaaga |
403 |
Q |
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||||||||||||||||| |||||||||||| |||||||| | |||||| |||| |
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| T |
43151628 |
aaagttacttaccatgactgtaagaggagagatatacataattatgttcaaga |
43151576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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