View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9366_low_120 (Length: 291)
Name: NF9366_low_120
Description: NF9366
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9366_low_120 |
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Alignment Details
Target: chr1 (Bit Score: 76; Significance: 4e-35; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 166 - 281
Target Start/End: Complemental strand, 41132315 - 41132200
Alignment:
| Q |
166 |
ccaaatttccactttttgctttctgcactggactgagaagaaatggagaaaaaacattgactaatcattaaaattacatatttaccctggcttaaggttt |
265 |
Q |
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|||||||||||||||||||||||| | ||||||||||||||||||| || | |||| ||||||||||||||||||||||||||| |||||||| | |||| |
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| T |
41132315 |
ccaaatttccactttttgctttctccgctggactgagaagaaatggggagagaacactgactaatcattaaaattacatatttaacctggctttaagttt |
41132216 |
T |
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| Q |
266 |
tattttttcgtctgtg |
281 |
Q |
| |
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||||||||||| |||| |
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| T |
41132215 |
tattttttcgtttgtg |
41132200 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 166 - 281
Target Start/End: Complemental strand, 35560834 - 35560719
Alignment:
| Q |
166 |
ccaaatttccactttttgctttctgcactggactgagaagaaatggagaaaaaacattgactaatcattaaaattacatatttaccctggcttaaggttt |
265 |
Q |
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|||||||||||||||||| ||||| |||||||||||||||||||| | | |||| ||||||||||||||||||||||||||||||| |||| || ||| |
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| T |
35560834 |
ccaaatttccactttttgatttctctactggactgagaagaaatgggaagagaacactgactaatcattaaaattacatatttaccctagctttagtttt |
35560735 |
T |
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| Q |
266 |
tattttttcgtctgtg |
281 |
Q |
| |
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||||||||||| |||| |
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| T |
35560734 |
tattttttcgtttgtg |
35560719 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 65 - 107
Target Start/End: Complemental strand, 35560936 - 35560894
Alignment:
| Q |
65 |
tttgtttgaagagaaatacaaaagagagaaattaagaagagat |
107 |
Q |
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| T |
35560936 |
tttgtttgaagagaaatacaaaagagataaattaagaagagat |
35560894 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 68; Significance: 2e-30; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 166 - 281
Target Start/End: Original strand, 23477667 - 23477782
Alignment:
| Q |
166 |
ccaaatttccactttttgctttctgcactggactgagaagaaatggagaaaaaacattgactaatcattaaaattacatatttaccctggcttaaggttt |
265 |
Q |
| |
|
||||||||||||||||| |||||| | || |||| ||||||||||| || | |||| |||||||||||||||||||||||||||||||||||| || ||| |
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| T |
23477667 |
ccaaatttccactttttactttctccgctagacttagaagaaatggggagacaacactgactaatcattaaaattacatatttaccctggctttagattt |
23477766 |
T |
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| Q |
266 |
tattttttcgtctgtg |
281 |
Q |
| |
|
||||||||||| |||| |
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| T |
23477767 |
tattttttcgtttgtg |
23477782 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 57 - 106
Target Start/End: Original strand, 23477544 - 23477593
Alignment:
| Q |
57 |
acactatgtttgtttgaagagaaatacaaaagagagaaattaagaagaga |
106 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23477544 |
acactgtgtttgtttgaagagaaatacaaaagagagaaattaagaagaga |
23477593 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 54 - 106
Target Start/End: Original strand, 362316 - 362368
Alignment:
| Q |
54 |
cttacactatgtttgtttgaagagaaatacaaaagagagaaattaagaagaga |
106 |
Q |
| |
|
|||||||| |||||||||| |||||||||| ||||||||||| ||| ||||| |
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|
| T |
362316 |
cttacactctgtttgtttggagagaaataccgaagagagaaataaaggagaga |
362368 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 17 - 57
Target Start/End: Original strand, 2872748 - 2872788
Alignment:
| Q |
17 |
actttggagcatatttctgaagaagcagagttggtcgctta |
57 |
Q |
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| T |
2872748 |
actttggagcatatttctgaagaagcagagttggtcgctta |
2872788 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 57 - 95
Target Start/End: Original strand, 35105387 - 35105425
Alignment:
| Q |
57 |
acactatgtttgtttgaagagaaatacaaaagagagaaa |
95 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||| |
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| T |
35105387 |
acactatgtttgtttgaagagaaatactaaagagagaaa |
35105425 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 55 - 107
Target Start/End: Complemental strand, 10406271 - 10406219
Alignment:
| Q |
55 |
ttacactatgtttgtttgaagagaaatacaaaagagagaaattaagaagagat |
107 |
Q |
| |
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||||||| |||||||||||||||||||| | ||||||||||| ||||||||| |
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| T |
10406271 |
ttacactctgtttgtttgaagagaaataaagaagagagaaatagagaagagat |
10406219 |
T |
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