View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9366_low_122 (Length: 288)
Name: NF9366_low_122
Description: NF9366
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9366_low_122 |
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Alignment Details
Target: chr5 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 19 - 267
Target Start/End: Original strand, 9588896 - 9589150
Alignment:
| Q |
19 |
gtcacaccatatgagctggaatggatagatttactatgtataactgatttggtaaaaagtcaaatgtcttta------tgttttaatcttgatcatttgt |
112 |
Q |
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| T |
9588896 |
gtcacaccatatgagctggaatggatagatttactatgtataactgatttggtaaaaagtcaaatgtctttatgtttatgttttaatcttgatcatttgt |
9588995 |
T |
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| Q |
113 |
ggtttgatctaatgacaattaatttatttatggatatttggatggttttggtgtcttatttgtttaaatatttattctacaagaattttttattctcaat |
212 |
Q |
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| T |
9588996 |
ggtttgatctaatgacaattaatttatttatggatatttggatggttttggtgtcttatttgtttaaatatttattctacaagaattttttattctcaac |
9589095 |
T |
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| Q |
213 |
agatcctaagagatgaaaactttggtcacttaaagtcatgagacttccttacata |
267 |
Q |
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| T |
9589096 |
agatcctaagagatgaaaattttggtcacttaaagtcatcagacttccttacata |
9589150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 220 - 270
Target Start/End: Original strand, 9603402 - 9603452
Alignment:
| Q |
220 |
aagagatgaaaactttggtcacttaaagtcatgagacttccttacatatgg |
270 |
Q |
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| T |
9603402 |
aagagatgaaaattttggacacttgaagtcatctgacttccttacatatgg |
9603452 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 220 - 263
Target Start/End: Complemental strand, 6458024 - 6457981
Alignment:
| Q |
220 |
aagagatgaaaactttggtcacttaaagtcatgagacttcctta |
263 |
Q |
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| T |
6458024 |
aagagatgaaaattttggtcacttgaagtcatcagacttcctta |
6457981 |
T |
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