View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9366_low_128 (Length: 276)
Name: NF9366_low_128
Description: NF9366
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9366_low_128 |
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Alignment Details
Target: chr8 (Bit Score: 246; Significance: 1e-136; HSPs: 10)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 258
Target Start/End: Complemental strand, 15983840 - 15983583
Alignment:
| Q |
1 |
gagtttggtgacatagcaagggctgatatgtgttatgggtataacactaacggagggtgccaaaaatggggtgaagcagggatacctacttgtaggaatc |
100 |
Q |
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|||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15983840 |
gagtctggtgacatagcaagggcagatatgtgttatgggtataacactaacggagggtgccaaaaatggggtgaagcagggatacctacttgtaggaatc |
15983741 |
T |
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| Q |
101 |
ctggtgataagtttgagaacaagccagtttacggtaatgacaatatcgtaaacaatatagaaaatgctagttatggcataagtgattgccaagaaatgtg |
200 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15983740 |
ctggtgataagtttgacaacaagccagtttacggtaatgacaatatcgtaaacaatatagaaaatgctagttatggcataagtgattgccaagaaatgtg |
15983641 |
T |
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| Q |
201 |
ttggagtaactgcagctgttttggattcaaatacttgtatgagaatggaactggctgt |
258 |
Q |
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| T |
15983640 |
ttggagtaactgcagctgttttggattcaaatacttgtatgagaatggaactggctgt |
15983583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 254
Target Start/End: Original strand, 15953308 - 15953561
Alignment:
| Q |
1 |
gagtttggtgacatagcaagggctgatatgtgttatgggtataacactaacggagggtgccaaaaatggggtgaagcagggatacctacttgtaggaatc |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| ||||||| |
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| T |
15953308 |
gagtttggtgacatagcaagggctgatatgtgttatgggtataacactaacggagggtgccaaaaatggggtgaagccaagatacctgcttgcaggaatc |
15953407 |
T |
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| Q |
101 |
ctggtgataagtttgagaacaagccagtttacggtaatgacaatatcgtaaacaatatagaaaatgctagttatggcataagtgattgccaagaaatgtg |
200 |
Q |
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| T |
15953408 |
ctggtgataagtttgataacaagcacgtttacagtaatgacaatatcgtaaacaatatagaaaatgctagttatggcataagtgattgccaagaaatgtg |
15953507 |
T |
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| Q |
201 |
ttggagtaactgcagctgttttggattcaaatacttgtatgagaatggaactgg |
254 |
Q |
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|||| |||||||||||||||||||||||| ||| |||| ||||||||||| |
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| T |
15953508 |
ctggactaactgcagctgttttggattcaataactactatggaaatggaactgg |
15953561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 6 - 254
Target Start/End: Complemental strand, 19150732 - 19150484
Alignment:
| Q |
6 |
tggtgacatagcaagggctgatatgtgttatgggtataacactaacggagggtgccaaaaatggggtgaagcagggatacctacttgtaggaatcctggt |
105 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| |||||||||||| |
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| T |
19150732 |
tggtgacatagcaagggctgatatgtgtaatgggtataacactaacggagggtgccaaaaatggggtgaagccaagatacctgcttgcaggaatcctggt |
19150633 |
T |
|
| Q |
106 |
gataagtttgagaacaagccagtttacggtaatgacaatatcgtaaacaatatagaaaatgctagttatggcataagtgattgccaagaaatgtgttgga |
205 |
Q |
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|||||||||||||||||||| |||||| ||||||||||||| ||| |||||||| |||||||||||| |||||||||||||||||||||||||| ||| |
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| T |
19150632 |
gataagtttgagaacaagcccgtttacagtaatgacaatatagtatacaatataaaaaatgctagtttaggcataagtgattgccaagaaatgtgctggg |
19150533 |
T |
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| Q |
206 |
gtaactgcagctgttttggattcaaatacttgtatgagaatggaactgg |
254 |
Q |
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||||||||||||||||||||||||| ||| |||| ||||||||||| |
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| T |
19150532 |
gtaactgcagctgttttggattcaataactactatggaaatggaactgg |
19150484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 9 - 231
Target Start/End: Original strand, 16004814 - 16005036
Alignment:
| Q |
9 |
tgacatagcaagggctgatatgtgttatgggtataacactaacggagggtgccaaaaatggggtgaagcagggatacctacttgtaggaatcctggtgat |
108 |
Q |
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|||||||||||| |||||||| |||||||||||||||||||| |||||||||||||| ||| |||| | | ||||||| |||| ||||||||||||||| |
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| T |
16004814 |
tgacatagcaagagctgatatatgttatgggtataacactaatggagggtgccaaaagtggcgtgatgtggagatacctgcttgcaggaatcctggtgat |
16004913 |
T |
|
| Q |
109 |
aagtttgagaacaagccagtttacggtaatgacaatatcgtaaacaatatagaaaatgctagttatggcataagtgattgccaagaaatgtgttggagta |
208 |
Q |
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| T |
16004914 |
atgtttgatagcaagttaggattcagtaataaagatatgttatacaatatagaaaatgctagttatggcataagtgattgccaagatatgtgctggagta |
16005013 |
T |
|
| Q |
209 |
actgcagctgttttggattcaaa |
231 |
Q |
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|||||||||| |||||||||||| |
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| T |
16005014 |
actgcagctgctttggattcaaa |
16005036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 11 - 228
Target Start/End: Original strand, 19185612 - 19185829
Alignment:
| Q |
11 |
acatagcaagggctgatatgtgttatgggtataacactaacggagggtgccaaaaatggggtgaagcagggatacctacttgtaggaatcctggtgataa |
110 |
Q |
| |
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|||||| |||||||||||||||||||||||||||||| || | || ||||||||||||||||| |||| ||||||||| || |||||||||||||||| |
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| T |
19185612 |
acataggaagggctgatatgtgttatgggtataacacgaatgatggatgccaaaaatggggtgatgcagagatacctacatgccggaatcctggtgataa |
19185711 |
T |
|
| Q |
111 |
gtttgagaacaagccagtttacggtaatgacaatatcgtaaacaatatagaaaatgctagttatggcataagtgattgccaagaaatgtgttggagtaac |
210 |
Q |
| |
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|||||| | |||| ||||||| |||||| || || | | || |||| |||| |||| ||||||||||||||||||||||| ||||||||| ||||| |
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| T |
19185712 |
gtttgatagcaagatagtttaccctaatgaaaaaattgaataccatattctaaattctagctatggcataagtgattgccaagatatgtgttggcgtaac |
19185811 |
T |
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| Q |
211 |
tgcagctgttttggattc |
228 |
Q |
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|||||||| ||||||||| |
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| T |
19185812 |
tgcagctgctttggattc |
19185829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 94 - 254
Target Start/End: Complemental strand, 15965131 - 15964971
Alignment:
| Q |
94 |
aggaatcctggtgataagtttgagaacaagccagtttacggtaatgacaatatcgtaaacaatatagaaaatgctagttatggcataagtgattgccaag |
193 |
Q |
| |
|
|||||||||||||||| |||||| | |||| |||||||| |||||| ||||| ||| || |||||| |||| ||| ||||||||||| ||| ||| ||| |
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| T |
15965131 |
aggaatcctggtgatatgtttgatagcaagttagtttacgttaatgaaaatatggtatacgatatagcaaatactaattatggcataaatgactgcgaag |
15965032 |
T |
|
| Q |
194 |
aaatgtgttggagtaactgcagctgttttggattcaaatacttgtatgagaatggaactgg |
254 |
Q |
| |
|
|||| || |||||||||||||||||||||||||||| | |||| |||| ||||||||||| |
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| T |
15965031 |
aaatatgctggagtaactgcagctgttttggattcagaaacttttatggtaatggaactgg |
15964971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 8 - 66
Target Start/End: Complemental strand, 15979557 - 15979499
Alignment:
| Q |
8 |
gtgacatagcaagggctgatatgtgttatgggtataacactaacggagggtgccaaaaa |
66 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||| |||||||| |||||| |
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| T |
15979557 |
gtgacatagcaagggctgatttgtgttatgggtataacactaatggagggtgtcaaaaa |
15979499 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 11 - 59
Target Start/End: Complemental strand, 19126393 - 19126345
Alignment:
| Q |
11 |
acatagcaagggctgatatgtgttatgggtataacactaacggagggtg |
59 |
Q |
| |
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||||||||||||||||| |||||||||||||||||||||| |||||||| |
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| T |
19126393 |
acatagcaagggctgatttgtgttatgggtataacactaatggagggtg |
19126345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 156 - 231
Target Start/End: Original strand, 15937581 - 15937656
Alignment:
| Q |
156 |
tatagaaaatgctagttatggcataagtgattgccaagaaatgtgttggagtaactgcagctgttttggattcaaa |
231 |
Q |
| |
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||||| ||||||||| || ||||||||||||| |||| ||||||||||| |||||||| || |||||||||||| |
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| T |
15937581 |
tataggaaatgctagctacagcataagtgattgtcaagctatgtgttggagaaactgcaggtgctttggattcaaa |
15937656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 162 - 231
Target Start/End: Original strand, 19189026 - 19189095
Alignment:
| Q |
162 |
aaatgctagttatggcataagtgattgccaagaaatgtgttggagtaactgcagctgttttggattcaaa |
231 |
Q |
| |
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||||||||| ||| ||||| |||||| ||||| |||||| |||| || |||||||| |||||||||||| |
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| T |
19189026 |
aaatgctagctataccataactgattgtcaagatatgtgtaggagaaattgcagctgctttggattcaaa |
19189095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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