View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9366_low_129 (Length: 271)
Name: NF9366_low_129
Description: NF9366
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9366_low_129 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 2 - 271
Target Start/End: Complemental strand, 50676477 - 50676208
Alignment:
| Q |
2 |
caattactgataaagggaaatgttggacaggttgttaaaataagagtaagcaaaccaactaaagagagaaaataaccctcacatgtcttaagtgtttaga |
101 |
Q |
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| T |
50676477 |
caattactgataaagggaaatgttggacaggttcttaaaataagagtaagcaaaccaactaaagagagaaaataaccctcacatgtcttaagtgtttaga |
50676378 |
T |
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| Q |
102 |
gatcttttgtactgtgagtccttcaaggaaacaacagataattgagataaccattggaagaaagaacttgactattacaattttactagttttggctgct |
201 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50676377 |
gatcttttgtactgtgagtccttcaaggaaacaacagataattgagataaccattggaagaaagaacttgactattacaattttactagttttggctgct |
50676278 |
T |
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| Q |
202 |
gtacactattggcatcaacaacactgtttgttttggtgatcttcttactttcgtgttcgttatcttcggt |
271 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50676277 |
gtacactattggcatcaacaacactgtttgttttggtgatcttcttactttcgtgttcgttatcttcggt |
50676208 |
T |
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