View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9366_low_13 (Length: 517)
Name: NF9366_low_13
Description: NF9366
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9366_low_13 |
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Alignment Details
Target: chr7 (Bit Score: 485; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 485; E-Value: 0
Query Start/End: Original strand, 7 - 499
Target Start/End: Complemental strand, 40068297 - 40067805
Alignment:
| Q |
7 |
ggagcatctttgtgccacacgcttcatcacaggacttataacaatcatcatgaaagcaacgaaagcgactccggagagaagcacccaaacggaaacgaga |
106 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40068297 |
ggagcatctttgtgccacacgattcatcacaggacttataacaatcatcatgaaagcaacgaaagcgactccggagagaagcacccaaacggaaacgaga |
40068198 |
T |
|
| Q |
107 |
gggctctttttgtctccgccgtcggctccgtttccggctaacgcaattgctaaagcgagaagaatccacgcggctaagtcgttgaacgcggcggctgcca |
206 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
40068197 |
gggctctttttgtctccgccgtcggctccgtttccggctaacgcaattgctaaagcgagaagaatccacgcggctaagtcgttgaacgcagcggctgcca |
40068098 |
T |
|
| Q |
207 |
tggcggtttctcctacgcgtgttgtgaggagtttgagttcagcgaggattcgtgctaagacggggaatgcggttatagaaagcgcaactcccatgaaaac |
306 |
Q |
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| T |
40068097 |
tggcggtttctcctacgcgtgttgtgaggagtttgagttcagcgaggattcgtgctaagacggggaatgcggttatagaaagcgcaactcccatgaaaac |
40067998 |
T |
|
| Q |
307 |
gatgaattggccgaatccggctttgtctgcgccgtcgacggttttgcggaggacaatggcaacgcctatgccgcagacgaaaggaagagtgattccacaa |
406 |
Q |
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| T |
40067997 |
gatgaattggccgaatccggctttgtctgcgccgtcgacggttttgcggaggacaatggcaacgcctatgccgcagacgaaaggaagagtgattccacaa |
40067898 |
T |
|
| Q |
407 |
gctgctatactgaatgctcttttaccgctacggcgaatcgagtttagatctaactcgagtccaacgaggaagagaaagaatagaagacctatg |
499 |
Q |
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| T |
40067897 |
gctgctatactgaatgctcttttaccgctacggcgaatcgagtttagatctaactcgagtccaacgaggaagagaaagaatagaagacctatg |
40067805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 8 - 499
Target Start/End: Complemental strand, 40026047 - 40025552
Alignment:
| Q |
8 |
gagcatctttgtgccacacgcttcatcacaggacttata----acaatcatcatgaaagcaacgaaagcgactccggagagaagcacccaaacggaaacg |
103 |
Q |
| |
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||||||||||| || |||||||||||||||||||||||| | |||||||||||||||||||||| || | ||| ||||||| |||||||||| |||| |
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| T |
40026047 |
gagcatctttgagctacacgcttcatcacaggacttatatataaaaatcatcatgaaagcaacgaaaccggcgccgcagagaagtacccaaacggcaacg |
40025948 |
T |
|
| Q |
104 |
agagggctctttttgtctccgccgtcggctccgtttccggctaacgcaattgctaaagcgagaagaatccacgcggctaagtcgttgaacgcggcggctg |
203 |
Q |
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| T |
40025947 |
agagggcttttaccgtctccgtcatcggattcttttcccgctaacgctattgctaaagcgagaagaatccacgcggttaagtcgtcgaatgctgctgccg |
40025848 |
T |
|
| Q |
204 |
ccatggcggtttctcctacgcgtgttgtgaggagtttgagttcagcgaggattcgtgctaagacggggaatgcggttatagaaagcgcaactcccatgaa |
303 |
Q |
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|||| || ||||| ||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||| ||||| |||||||| ||||||||||| |
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| T |
40025847 |
ccattgcagtttcgcctacgcgtgttgtgagaagtttgagttcagcgaggattcgtcctaagacggggaatgctgttattgaaagcgctactcccatgaa |
40025748 |
T |
|
| Q |
304 |
aacgatgaattggccgaatccggctttgtctgcgccgtcgacggttttgcggaggacaatggcaacgcctatgccgcagacgaaaggaagagtgattcca |
403 |
Q |
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||| | |||| || |||||| ||||||||||| ||||| | ||||||||||| |||||||| ||||| |||||| | ||||||||||| | ||||||| |
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| T |
40025747 |
aactaggaatgtgctgaatccagctttgtctgctccgtctatggttttgcggaaaacaatggcgacgccaatgccggatacgaaaggaagtgagattcca |
40025648 |
T |
|
| Q |
404 |
caagctgctatactgaatgctcttttaccgctacggcgaatcgagtttagatctaactcgagtccaacgaggaagagaaagaatagaagacctatg |
499 |
Q |
| |
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||||||||||| |||||||||||||||||||| |||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
40025647 |
caagctgctatgctgaatgctcttttaccgctgcggcgaattgagtttagatctaactcgagtccaacaaggaagagaaagaatagaagacctatg |
40025552 |
T |
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