View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9366_low_138 (Length: 259)
Name: NF9366_low_138
Description: NF9366
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9366_low_138 |
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| [»] scaffold0062 (4 HSPs) |
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Alignment Details
Target: scaffold0062 (Bit Score: 222; Significance: 1e-122; HSPs: 4)
Name: scaffold0062
Description:
Target: scaffold0062; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 15725 - 15962
Alignment:
| Q |
1 |
gaagggaaataatccaaatgtgacggtgataataagcattggaggtaatgacactgttaaaactccattcaatcctgttgaggaaaatatctggattacg |
100 |
Q |
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| T |
15725 |
gaagggaaataatccaaatgtgaaggtggtaataagcattggaggtaatgacaccgttaaaactccattcaatcctgttgaggaaactatctggattacg |
15824 |
T |
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| Q |
101 |
cgggctgtgtcttcactcaaagtgatcatccaaaaatacaaggatcaaaccggcaacataattgatggcattgacattaattatcttaacgtcttccata |
200 |
Q |
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| T |
15825 |
cgggctgtgtcttcactcaaagtgatcatccaaaaatacaaggatcaaaccggcaacataattgatggcattgacattaattatcttaacgtcttccata |
15924 |
T |
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| Q |
201 |
ctacaaatgacacaggtaagcttcgttttgccaggtgc |
238 |
Q |
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| T |
15925 |
ctacaaatgacacaggtaagcttcgttttgccaggtgc |
15962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0062; HSP #2
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 25893 - 26130
Alignment:
| Q |
1 |
gaagggaaataatccaaatgtgacggtgataataagcattggaggtaatgacactgttaaaactccattcaatcctgttgaggaaaatatctggattacg |
100 |
Q |
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| T |
25893 |
gaagggaaataatccaaatgtgaaggtggtaataagcattggaggtaatgacaccgttaaaactccattcaatcctgttgaggaaactatctggattacg |
25992 |
T |
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| Q |
101 |
cgggctgtgtcttcactcaaagtgatcatccaaaaatacaaggatcaaaccggcaacataattgatggcattgacattaattatcttaacgtcttccata |
200 |
Q |
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| T |
25993 |
cgggctgtgtcttcactcaaagtgatcatccaaaaatacaaggatcaaaccggcaacataattgatggcattgacattaattatcttaacgtcttccata |
26092 |
T |
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| Q |
201 |
ctacaaatgacacaggtaagcttcgttttgccaggtgc |
238 |
Q |
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| T |
26093 |
ctacaaatgacacaggtaagcttcgttttgccaggtgc |
26130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0062; HSP #3
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 36059 - 36296
Alignment:
| Q |
1 |
gaagggaaataatccaaatgtgacggtgataataagcattggaggtaatgacactgttaaaactccattcaatcctgttgaggaaaatatctggattacg |
100 |
Q |
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||||||||||||||||||||||| |||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
36059 |
gaagggaaataatccaaatgtgaaggtggtaataagcattggaggtaatgacaccgttaaaactccattcaatcctgttgaggaaactatctggattacg |
36158 |
T |
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| Q |
101 |
cgggctgtgtcttcactcaaagtgatcatccaaaaatacaaggatcaaaccggcaacataattgatggcattgacattaattatcttaacgtcttccata |
200 |
Q |
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| T |
36159 |
cgggctgtgtcttcactcaaagtgatcatccaaaaatacaaggatcaaaccggcaacataattgatggcattgacattaattatcttaacgtcttccata |
36258 |
T |
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| Q |
201 |
ctacaaatgacacaggtaagcttcgttttgccaggtgc |
238 |
Q |
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| T |
36259 |
ctacaaatgacacaggtaagcttcgttttgccaggtgc |
36296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0062; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 149
Target Start/End: Original strand, 5397 - 5542
Alignment:
| Q |
1 |
gaagggaaataatccaaatgtgacggtgataataagcattggaggtaatgacactgttaaaactccattcaatcctgttgaggaaaatatctggattacg |
100 |
Q |
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||||| ||||||| |||||||| |||| |||||||| |||||||| |||| | ||||||||||||||||||| |||||| ||||| |||| | |
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| T |
5397 |
gaaggaaaataataaaaatgtgaaggtggtaataagctttggaggttgtgac---gaaaaaactccattcaatcctgctgaggataatatatggacggag |
5493 |
T |
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| Q |
101 |
cgggctgtgtcttcactcaaagtgatcatccaaaaatacaaggatcaaa |
149 |
Q |
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| T |
5494 |
aaagctgtggcttcactcaaagtgatcatcctaagattcaaggatcaaa |
5542 |
T |
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