View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9366_low_142 (Length: 253)
Name: NF9366_low_142
Description: NF9366
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9366_low_142 |
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| [»] chr7 (7 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 154; Significance: 9e-82; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 84 - 253
Target Start/End: Complemental strand, 13398043 - 13397874
Alignment:
| Q |
84 |
atataaataattagcaataattcttgcttccctaatcaacatggatgtattactaggtctaaacacaagcagaacaagaatactcaatatatattgattt |
183 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||| |||| |
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| T |
13398043 |
atataaataattagcaataattcttgcttccctaatcaacatggatgtactactaggtctaaacagaagcagaacaagaatactcaatatatattaattt |
13397944 |
T |
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| Q |
184 |
gcaaaaatatccttatacttcaattcttgataaataaccaagctctaaatacggtaataggatcactcct |
253 |
Q |
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| T |
13397943 |
gcaaaaatatcgttatacttcaattcttgataaataaccaagctctaaatacggtaataggatcactcct |
13397874 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 81 - 233
Target Start/End: Complemental strand, 20407882 - 20407733
Alignment:
| Q |
81 |
tacatataaataattagcaataattcttgcttccctaatcaacatggatgtattactaggtctaaacacaagcagaacaagaatactcaatatatattga |
180 |
Q |
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|||| ||||||||| || |||||||||||||||||||||||||||||||| |||||||||| ||||| | ||||||||| | |||||||||||| | |
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| T |
20407882 |
tacacataaataatgagtaataattcttgcttccctaatcaacatggatgac---ctaggtctaatcacaatcggaacaagaaaattcaatatatattaa |
20407786 |
T |
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| Q |
181 |
tttgcaaaaatatccttatacttcaattcttgataaataaccaagctctaaat |
233 |
Q |
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| T |
20407785 |
ttcgcaaaactatctttatacttcaattcttgataaagaaccaagctctaaat |
20407733 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 81 - 233
Target Start/End: Complemental strand, 20442506 - 20442357
Alignment:
| Q |
81 |
tacatataaataattagcaataattcttgcttccctaatcaacatggatgtattactaggtctaaacacaagcagaacaagaatactcaatatatattga |
180 |
Q |
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| T |
20442506 |
tacacataaataatgagtaataattcttgcttccctaatcaacatggatgca---ctagatctaaacccaatcgcaacaagaatattcaatatatattaa |
20442410 |
T |
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| Q |
181 |
tttgcaaaaatatccttatacttcaattcttgataaataaccaagctctaaat |
233 |
Q |
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| T |
20442409 |
ttttcaaaactatctttatacttcaattcttgataaagaaccaagctctaaat |
20442357 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 135 - 251
Target Start/End: Original strand, 20373874 - 20373990
Alignment:
| Q |
135 |
actaggtctaaacacaagcagaacaagaatactcaatatatattgatttgcaaaaatatccttatacttcaattcttgataaataaccaagctctaaata |
234 |
Q |
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| T |
20373874 |
actaggtctaaaaacaagcagaacaagaatattcaacatatattaatttgcagaaatatctttaaacttcaattcttgataaataacaaatctctaaatg |
20373973 |
T |
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| Q |
235 |
cggtaataggatcactc |
251 |
Q |
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| T |
20373974 |
cggtaataagatcactc |
20373990 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 77 - 215
Target Start/End: Original strand, 20140164 - 20140299
Alignment:
| Q |
77 |
agtatacatataaataattagcaataattcttgcttccctaatcaacatggatgtattactaggtctaaacacaagcagaacaagaatactcaatatata |
176 |
Q |
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|||||| | ||||||||| || ||||||||||| ||||||||||||| ||||||||| ||||||||||||||| |||| ||| |||| ||||| | |
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| T |
20140164 |
agtatagaaataaataatcagtaataattcttggttccctaatcaacgtggatgtat---taggtctaaacacaatcagagcaataatatcgaatatgca |
20140260 |
T |
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| Q |
177 |
ttgatttgcaaaaatatccttatacttcaattcttgata |
215 |
Q |
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| T |
20140261 |
ttaatttgcaaaaatatctttatagttcaattattgata |
20140299 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 87 - 163
Target Start/End: Complemental strand, 20423433 - 20423360
Alignment:
| Q |
87 |
taaataattagcaataattcttgcttccctaatcaacatggatgtattactaggtctaaacacaagcagaacaagaa |
163 |
Q |
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| T |
20423433 |
taaataatgagtaataattcttgcttccccaatcaacatggatg---tactatgtctaaacacaatcggaacaagaa |
20423360 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 99 - 165
Target Start/End: Original strand, 20132961 - 20133024
Alignment:
| Q |
99 |
aataattcttgcttccctaatcaacatggatgtattactaggtctaaacacaagcagaacaagaata |
165 |
Q |
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| T |
20132961 |
aataattcttgcttccctaatctacgtggatg---tactaggtctaaacacaatcagaacaataata |
20133024 |
T |
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